miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>53572_ptc-miRf11750-akr:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 agacctatgttgtcttggact 72
          |||||||||||||||||||||
Sbjct: 56 agacctatgttgtcttggact 76

>52761_ptc-miRf10939-akr:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 31 attgggtctaacatgtttgcgagac 55
          |||||||||||||||||||| ||||
Sbjct: 58 attgggtctaacatgtttgctagac 82

>52450_ptc-miRf10628-akr:pmrd
          Length = 164

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 65  cttggacttggctgactgccaagtt 89
           ||||||||||||| |||||||||||
Sbjct: 136 cttggacttggctaactgccaagtt 160



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 65 cttggacttggctgactgccaagt 88
          ||||||||||| ||||||||||||
Sbjct: 1  cttggacttggttgactgccaagt 24

>52117_ptc-miRf10295-akr:pmrd
          Length = 92

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 17 ctaagtctaaatgtattgggtctaacat 44
          ||||||| || |||||||||||||||||
Sbjct: 42 ctaagtccaagtgtattgggtctaacat 15