miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52623_ptc-miRf10801-akr:pmrd
          Length = 110

 Score =  210 bits (106), Expect = 2e-55
 Identities = 109/110 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>54263_ptc-miRf12441-akr:pmrd
          Length = 119

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 5   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgatttgatatt 64

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 114



 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 73  gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38



 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaac 39
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 81  gttgcgcagcgaaattctgtttcgctgccgcaactgaac 119




>53719_ptc-miRf11897-akr:pmrd
          Length = 119

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 64

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 114



 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 73  gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38



 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaac 39
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 81  gttgcgcagcgaaattctgtttcgctgccgcaactgaac 119




>52621_ptc-miRf10799-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52611_ptc-miRf10789-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctactgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52552_ptc-miRf10730-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52532_ptc-miRf10710-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgagttgatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52445_ptc-miRf10623-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52308_ptc-miRf10486-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52141_ptc-miRf10319-akr:pmrd
          Length = 110

 Score =  194 bits (98), Expect = 9e-51
 Identities = 107/110 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattgatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagtgaaattctgtttcgctgccgcaac 110




>54271_ptc-miRf12449-akr:pmrd
          Length = 110

 Score =  186 bits (94), Expect = 2e-48
 Identities = 106/110 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcaacgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52533_ptc-miRf10711-akr:pmrd
          Length = 110

 Score =  186 bits (94), Expect = 2e-48
 Identities = 106/110 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cactgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>52354_ptc-miRf10532-akr:pmrd
          Length = 110

 Score =  186 bits (94), Expect = 2e-48
 Identities = 106/110 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgacgcaactgaacctcctgcagcgatttgatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgctgccgaattgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110




>54325_ptc-miRf12503-akr:pmrd
          Length = 119

 Score =  182 bits (92), Expect = 4e-47
 Identities = 104/108 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 64

                                                           
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgca 108
           ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgacgca 112



 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 73  gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaac 39
           |||||||||||||||||| |||||||| |||| ||||||
Sbjct: 81  gttgcgcagcgaaattctgtttcgctgacgcacctgaac 119




>54200_ptc-miRf12378-akr:pmrd
          Length = 119

 Score =  178 bits (90), Expect = 6e-46
 Identities = 105/110 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||
Sbjct: 5   gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgatttaatatt 64

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgacgcaac 114



 Score = 75.8 bits (38), Expect = 6e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 73  gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38



 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaac 39
           |||||||||||||||||| |||||||| |||||||||||
Sbjct: 81  gttgcgcagcgaaattctgtttcgctgacgcaactgaac 119




>53515_ptc-miRf11693-akr:pmrd
          Length = 118

 Score =  178 bits (90), Expect = 6e-46
 Identities = 106/110 (96%), Gaps = 1/110 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 5   gttgcgcagcgaaattctgtttcgctgcc-caactgaacctgctgcagcgatttgatatt 63

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 113



 Score = 69.9 bits (35), Expect = 4e-13
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaac 39
           |||||||||||||||||| ||||||||||||||||||||
Sbjct: 80  gttgcgcagcgaaattctgtttcgctgccgcaactgaac 118



 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 73  gtgtgttgcgcagcgaaattctgtttcgctgcc 105
           |||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtgttgcgcagcgaaattctgtttcgctgcc 33




>52579_ptc-miRf10757-akr:pmrd
          Length = 110

 Score =  170 bits (86), Expect = 1e-43
 Identities = 104/110 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||| ||||||||||||| ||||||||| || |||||
Sbjct: 1   gttgcgcagcgaaattctgtttcgctgtcgcaactgaacctgctgcagcgatttaatatt 60

                                                             
Query: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
           |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61  cgctgccgatttgtgtgttgcgcagcgaaattctgttttgctgccgcaac 110




>52642_ptc-miRf10820-akr:pmrd
          Length = 102

 Score =  127 bits (64), Expect = 2e-30
 Identities = 67/68 (98%)
 Strand = Plus / Plus

                                                                       
Query: 43  ctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 102
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgcagcgaattaatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 60

                   
Query: 103 gccgcaac 110
           ||||||||
Sbjct: 61  gccgcaac 68



 Score =  107 bits (54), Expect = 2e-24
 Identities = 63/66 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
           |||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct: 35  gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 94

                 
Query: 61  cgctgc 66
           ||||||
Sbjct: 95  cgctgc 100




>54315_ptc-miRf12493-akr:pmrd
          Length = 83

 Score = 71.9 bits (36), Expect = 9e-14
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 43  ctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 102
           ||||||||||||   |||||||||||| |||||||||| ||||||||||| || ||||||
Sbjct: 11  ctgcagcgaattagcattcgctgccgaattgtgtgttgtgcagcgaaattgtgattcgct 70

               
Query: 103 gccg 106
           ||||
Sbjct: 71  gccg 74




>52150_ptc-miRf10328-akr:pmrd
          Length = 99

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 58  attcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgc 104
           |||||||||||| |||||||||| ||||||||| |||| ||||||||
Sbjct: 53  attcgctgccgaattgtgtgttgtgcagcgaaactctgattcgctgc 99




>54190_ptc-miRf12368-akr:pmrd
          Length = 143

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                       
Query: 41  tcctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcg 100
           ||||||||||||||   |||||||||||| |||||||||  |||||||| || || ||||
Sbjct: 125 tcctgcagcgaattagcattcgctgccgaattgtgtgttctgcagcgaagttgtgattcg 66

                 
Query: 101 ctgccg 106
           ||||||
Sbjct: 65  ctgccg 60




>53975_ptc-miRf12153-akr:pmrd
          Length = 75

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 45  gcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgc 104
           ||||||||||   |||||||||||| |||||||||  ||||||||||| || ||||||||
Sbjct: 9   gcagcgaattagcattcgctgccgaattgtgtgttctgcagcgaaattgtgattcgctgc 68

             
Query: 105 cg 106
           ||
Sbjct: 69  cg 70




>54011_ptc-miRf12189-akr:pmrd
          Length = 158

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                       
Query: 43  ctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 102
           ||||||||||||   |||||||| ||| |||||||||| ||||||||| | || ||||||
Sbjct: 11  ctgcagcgaattagcattcgctgtcgaattgtgtgttgtgcagcgaaactgtgattcgct 70

               
Query: 103 gccg 106
           ||||
Sbjct: 71  gccg 74




>52355_ptc-miRf10533-akr:pmrd
          Length = 112

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                      
Query: 1  gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
          |||| ||||||||| |||  ||| |||||| ||||||  || ||||||||||||   |||
Sbjct: 3  gttgtgcagcgaaactctgattcactgccgaaactgagtcttctgcagcgaattagcatt 62

                   
Query: 61 cgctgccga 69
          |||||||||
Sbjct: 63 cgctgccga 71



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 21  ttcgctgccgcaactgaacctcctgcagcgaattgatattcgctgccga 69
           |||||||||| ||||||  || ||||||||||||   ||||||||||||
Sbjct: 61  ttcgctgccgaaactgagtcttctgcagcgaattagcattcgctgccga 109




>52207_ptc-miRf10385-akr:pmrd
          Length = 112

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 21  ttcgctgccgcaactgaacctcctgcagcgaattgatattcgctgccga 69
           |||||||||| ||||||  || ||||||||||||   ||||||||||||
Sbjct: 61  ttcgctgccgaaactgagtcttctgcagcgaattagcattcgctgccga 109