miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53073_ptc-miRf11251-akr:pmrd
Length = 150
Score = 188 bits (95), Expect = 5e-49
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1 cccacgcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cccacgcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaa 64
Query: 61 gacgcgtccacgcccaatctcctgttgggtcaggg 95
|||||||||||||||||||||||||||||||||||
Sbjct: 63 gacgcgtccacgcccaatctcctgttgggtcaggg 29
>52430_ptc-miRf10608-akr:pmrd
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 6 gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 60
Query: 66 gtccacgcccaatctcctgttgggt 90
|||||||||||||||||||||||||
Sbjct: 61 gtccacgcccaatctcctgttgggt 85
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 51 gttgggccaagacgcgtccacgcccaatc 79
|||||||| |||||||||||||||||||
Sbjct: 36 gttgggcctggacgcgtccacgcccaatc 8
>53733_ptc-miRf11911-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 61 gacgcgtccacgcccaatctcctgttgg 88
||||||||||||||||| ||| ||||||
Sbjct: 28 gacgcgtccacgcccaacctcgtgttgg 1
>53732_ptc-miRf11910-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 61 gacgcgtccacgcccaatctcctgttgg 88
||||||||||||||||| ||| ||||||
Sbjct: 28 gacgcgtccacgcccaacctcgtgttgg 1
