miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>53073_ptc-miRf11251-akr:pmrd
          Length = 150

 Score =  188 bits (95), Expect = 5e-49
 Identities = 95/95 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacgcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cccacgcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaa 64

                                              
Query: 61  gacgcgtccacgcccaatctcctgttgggtcaggg 95
           |||||||||||||||||||||||||||||||||||
Sbjct: 63  gacgcgtccacgcccaatctcctgttgggtcaggg 29




>52430_ptc-miRf10608-akr:pmrd
          Length = 85

 Score =  168 bits (85), Expect = 5e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 6  gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcctagctctaggttgggccataacgcgtctgcaccccactcaacgttgggccaagacgc 60

                                   
Query: 66 gtccacgcccaatctcctgttgggt 90
          |||||||||||||||||||||||||
Sbjct: 61 gtccacgcccaatctcctgttgggt 85




>53668_ptc-miRf11846-akr:pmrd
          Length = 107

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                       
Query: 51 gttgggccaagacgcgtccacgcccaatc 79
          ||||||||  |||||||||||||||||||
Sbjct: 36 gttgggcctggacgcgtccacgcccaatc 8




>53733_ptc-miRf11911-akr:pmrd
          Length = 81

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 61 gacgcgtccacgcccaatctcctgttgg 88
          ||||||||||||||||| ||| ||||||
Sbjct: 28 gacgcgtccacgcccaacctcgtgttgg 1




>53732_ptc-miRf11910-akr:pmrd
          Length = 81

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 61 gacgcgtccacgcccaatctcctgttgg 88
          ||||||||||||||||| ||| ||||||
Sbjct: 28 gacgcgtccacgcccaacctcgtgttgg 1