miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52454_ptc-miRf10632-akr:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 2e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 16 cttgggtcttgatagaggacccaacaaaattgggtccttacgcacgacccatt 68
||||||||||||| |||||| || ||||||||||||| ||||| ||| ||||
Sbjct: 2 cttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcatt 54
>52453_ptc-miRf10631-akr:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 2e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 16 cttgggtcttgatagaggacccaacaaaattgggtccttacgcacgacccatt 68
||||||||||||| |||||| || ||||||||||||| ||||| ||| ||||
Sbjct: 2 cttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcatt 54
>52144_ptc-miRf10322-akr:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 2e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 16 cttgggtcttgatagaggacccaacaaaattgggtccttacgcacgacccatt 68
||||||||||||| |||||| || ||||||||||||| ||||| ||| ||||
Sbjct: 2 cttgggtcttgatgaaggacctaataaaattgggtcctgacgcatgactcatt 54
>52456_ptc-miRf10634-akr:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ttgggtcttgatagaggacccaa 39
|||||||||||||||||||||||
Sbjct: 18 ttgggtcttgatagaggacccaa 40
>52106_ptc-miRf10284-akr:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 33 gacccaacaaaattgggtccttacgcacgacccattgatcttgggtc 79
||||||| | |||||||||| ||||| |||||||||||| ||||||
Sbjct: 38 gacccaatagaattgggtccatacgctagacccattgatcatgggtc 84
>53244_ptc-miRf11422-akr:pmrd
Length = 154
Score = 38.2 bits (19), Expect = 0.001
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 8 ccaggaaacttgggtcttgatagaggacccaacaaaattgggtccttacgcacgaccca 66
||||||| |||||||||||| || ||||| || | ||||||||| ||||| ||||||
Sbjct: 154 ccaggaaccttgggtcttgacaggggacctaaaaggattgggtccagacgcaagaccca 96
>52677_ptc-miRf10855-akr:pmrd
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 31 aggacccaacaaaattgggtcct 53
||||||||| |||||||||||||
Sbjct: 80 aggacccaagaaaattgggtcct 58
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 38.2 bits (19), Expect = 0.001
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 44 attgggtccttacgcacgacccattgatcttgggtcttg 82
|||||||||| ||||| ||||||| | |||||||||||
Sbjct: 100 attgggtcctaacgcaggacccatgaaccttgggtcttg 138
