miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52406_ptc-miRf10584-akr:pmrd
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgcgcagcgaaattctttttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>54263_ptc-miRf12441-akr:pmrd
Length = 119
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 5 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgatttgatatt 64
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 114
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 119
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 73 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38
>53719_ptc-miRf11897-akr:pmrd
Length = 119
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 64
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 114
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 119
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 73 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38
>52621_ptc-miRf10799-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52611_ptc-miRf10789-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctactgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52552_ptc-miRf10730-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52532_ptc-miRf10710-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgagttgatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52445_ptc-miRf10623-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52308_ptc-miRf10486-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52141_ptc-miRf10319-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattgatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagtgaaattctgtttcgctgccgcaac 110
>54271_ptc-miRf12449-akr:pmrd
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcaacgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52533_ptc-miRf10711-akr:pmrd
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>52354_ptc-miRf10532-akr:pmrd
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgacgcaactgaacctcctgcagcgatttgatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgccgaattgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
>54325_ptc-miRf12503-akr:pmrd
Length = 119
Score = 190 bits (96), Expect = 1e-49
Identities = 105/108 (97%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 5 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 64
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgca 108
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 65 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgacgca 112
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 73 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38
Score = 61.9 bits (31), Expect = 9e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 39
||||||||||||||||||||||||||| |||| ||||||
Sbjct: 81 gttgcgcagcgaaattctgtttcgctgacgcacctgaac 119
>54200_ptc-miRf12378-akr:pmrd
Length = 119
Score = 186 bits (94), Expect = 2e-48
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct: 5 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgatttaatatt 64
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 65 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgacgcaac 114
Score = 75.8 bits (38), Expect = 6e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 73 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgttgcgcagcgaaattctgtttcgctgccgcaac 38
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 39
||||||||||||||||||||||||||| |||||||||||
Sbjct: 81 gttgcgcagcgaaattctgtttcgctgacgcaactgaac 119
>53515_ptc-miRf11693-akr:pmrd
Length = 118
Score = 186 bits (94), Expect = 2e-48
Identities = 107/110 (97%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 5 gttgcgcagcgaaattctgtttcgctgcc-caactgaacctgctgcagcgatttgatatt 63
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 113
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gttgcgcagcgaaattctgtttcgctgccgcaactgaac 118
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 73 gtgtgttgcgcagcgaaattctgtttcgctgcc 105
|||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtgttgcgcagcgaaattctgtttcgctgcc 33
>52579_ptc-miRf10757-akr:pmrd
Length = 110
Score = 178 bits (90), Expect = 6e-46
Identities = 105/110 (95%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||
Sbjct: 1 gttgcgcagcgaaattctgtttcgctgtcgcaactgaacctgctgcagcgatttaatatt 60
Query: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgccgcaac 110
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 cgctgccgatttgtgtgttgcgcagcgaaattctgttttgctgccgcaac 110
>52642_ptc-miRf10820-akr:pmrd
Length = 102
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 43 ctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 102
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcagcgaattaatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 60
Query: 103 gccgcaac 110
||||||||
Sbjct: 61 gccgcaac 68
Score = 115 bits (58), Expect = 7e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 35 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctgctgcagcgaattaatatt 94
Query: 61 cgctgc 66
||||||
Sbjct: 95 cgctgc 100
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 71.9 bits (36), Expect = 9e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 43 ctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 102
|||||||||||| |||||||||||| |||||||||| ||||||||||| || ||||||
Sbjct: 11 ctgcagcgaattagcattcgctgccgaattgtgtgttgtgcagcgaaattgtgattcgct 70
Query: 103 gccg 106
||||
Sbjct: 71 gccg 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactga 37
|||| ||||||||||| || |||||||||| ||||||
Sbjct: 45 gttgtgcagcgaaattgtgattcgctgccgaaactga 81
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 61.9 bits (31), Expect = 9e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 58 attcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgc 104
|||||||||||| |||||||||| ||||||||| |||| ||||||||
Sbjct: 53 attcgctgccgaattgtgtgttgtgcagcgaaactctgattcgctgc 99
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 60.0 bits (30), Expect = 4e-10
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 41 tcctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcg 100
|||||||||||||| |||||||||||| ||||||||| |||||||| || || ||||
Sbjct: 125 tcctgcagcgaattagcattcgctgccgaattgtgtgttctgcagcgaagttgtgattcg 66
Query: 101 ctgccg 106
||||||
Sbjct: 65 ctgccg 60
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 60.0 bits (30), Expect = 4e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 45 gcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgctgc 104
|||||||||| |||||||||||| ||||||||| ||||||||||| || ||||||||
Sbjct: 9 gcagcgaattagcattcgctgccgaattgtgtgttctgcagcgaaattgtgattcgctgc 68
Query: 105 cg 106
||
Sbjct: 69 cg 70
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 56.0 bits (28), Expect = 6e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 43 ctgcagcgaattgatattcgctgccgatttgtgtgttgcgcagcgaaattctgtttcgct 102
|||||||||||| |||||||| ||| |||||||||| ||||||||| | || ||||||
Sbjct: 11 ctgcagcgaattagcattcgctgtcgaattgtgtgttgtgcagcgaaactgtgattcgct 70
Query: 103 gccg 106
||||
Sbjct: 71 gccg 74
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 3e-07
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
|||| ||||||||| |||| ||| |||||| |||||| || |||||||||||| |||
Sbjct: 3 gttgtgcagcgaaactctgattcactgccgaaactgagtcttctgcagcgaattagcatt 62
Query: 61 cgctgccga 69
|||||||||
Sbjct: 63 cgctgccga 71
Score = 42.1 bits (21), Expect = 8e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 21 ttcgctgccgcaactgaacctcctgcagcgaattgatattcgctgccga 69
|||||||||| |||||| || |||||||||||| ||||||||||||
Sbjct: 61 ttcgctgccgaaactgagtcttctgcagcgaattagcattcgctgccga 109
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 57/69 (82%)
Strand = Plus / Plus
Query: 1 gttgcgcagcgaaattctgtttcgctgccgcaactgaacctcctgcagcgaattgatatt 60
|||| ||||||||| |||| |||||||||| ||||| | |||||||||||| |||
Sbjct: 3 gttgtgcagcgaaactctgattcgctgccgaaactgtgtcagctgcagcgaattagcatt 62
Query: 61 cgctgccga 69
|||||||||
Sbjct: 63 cgctgccga 71
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 8e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 21 ttcgctgccgcaactgaacctcctgcagcgaattgatattcgctgccga 69
|||||||||| |||||| || |||||||||||| ||||||||||||
Sbjct: 61 ttcgctgccgaaactgagtcttctgcagcgaattagcattcgctgccga 109
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 6 gcagcgaaattctgtttcgctgccgcaactga 37
||||||||||| || |||||||||| ||||||
Sbjct: 43 gcagcgaaattgtgattcgctgccgaaactga 74
