miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52511_ptc-miRf10689-akr:pmrd
Length = 110
Score = 111 bits (56), Expect = 1e-25
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 9 gtaaatccgttggtaatnnnnnnntaaatttatctgcttcatttcgtcggtatatccctc 68
||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 9 gtaaatccgttggtaataaaaaaataaatttatccgcttcatttcgtcggtatatccctc 68
Query: 69 ggtaataatannnnnnnattaccgacggatttaccgatggaa 110
|||||||||| |||||||||||||||||||||||||
Sbjct: 69 ggtaataatatttttttattaccgacggatttaccgatggaa 110
>53767_ptc-miRf11945-akr:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 46 ttcatttcgtcggtatatccctcggtaataata 78
|||||| ||||||||||||||||||||||||||
Sbjct: 64 ttcattccgtcggtatatccctcggtaataata 96
>53628_ptc-miRf11806-akr:pmrd
Length = 146
Score = 56.0 bits (28), Expect = 6e-09
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaatnnnnnnntaaatttatctgcttcatttcgtcggtatatc 64
||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct: 72 gtcggtaaatccgttggtaataaaaaa-taaatttatccgcttcatttcgtcggtaattc 130
Query: 65 cctcggtaat 74
| ||||||||
Sbjct: 131 cgtcggtaat 140
>53366_ptc-miRf11544-akr:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttctgtcggtaaatccgttggta 23
|||||||||||||||||||||||
Sbjct: 76 ttctgtcggtaaatccgttggta 98
>54221_ptc-miRf12399-akr:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 86 attaccgacggatttaccgatggaa 110
|||||||||||||||||||| ||||
Sbjct: 126 attaccgacggatttaccgacggaa 102
>54164_ptc-miRf12342-akr:pmrd
Length = 65
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 11 gtcggtaaatccgttggtaat 31
>54049_ptc-miRf12227-akr:pmrd
Length = 75
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 86 attaccgacggatttaccgatggaa 110
|||||||||||||||||||| ||||
Sbjct: 8 attaccgacggatttaccgacggaa 32
>53834_ptc-miRf12012-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 86 attaccgacggatttaccgatggaa 110
|||||||||||||||||||| ||||
Sbjct: 77 attaccgacggatttaccgacggaa 53
>53338_ptc-miRf11516-akr:pmrd
Length = 63
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 10 gtcggtaaatccgttggtaat 30
>53318_ptc-miRf11496-akr:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 86 attaccgacggatttaccgatggaa 110
||||||||| |||||||||||||||
Sbjct: 66 attaccgacagatttaccgatggaa 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 2 tctgtcggtaaatccgttggtaat 25
||||||||||| ||||||||||||
Sbjct: 77 tctgtcggtaattccgttggtaat 54
>53290_ptc-miRf11468-akr:pmrd
Length = 65
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 11 gtcggtaaatccgttggtaat 31
>52825_ptc-miRf11003-akr:pmrd
Length = 63
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 10 gtcggtaaatccgttggtaat 30
>52697_ptc-miRf10875-akr:pmrd
Length = 69
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 8 gtcggtaaatccgttggtaat 28
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 ttctgtcggtaaatccgttggtaat 25
||||||| |||||||||||||||||
Sbjct: 65 ttctgtcagtaaatccgttggtaat 41
>51998_ptc-miRf10176-akr:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttctgtcggtaaatccgttggtaat 25
||||||||||||||||||| |||||
Sbjct: 1 ttctgtcggtaaatccgtttgtaat 25
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 107 gtcggtaaatccgttggtaat 87
>51983_ptc-miRf10161-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaat 25
|||||||||||||||||||||
Sbjct: 73 gtcggtaaatccgttggtaat 93
>54290_ptc-miRf12468-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 55 gtcggtaaatccgttggtaa 74
>54140_ptc-miRf12318-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 55 gtcggtaaatccgttggtaa 74
>53968_ptc-miRf12146-akr:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 24 gtcggtaaatccgttggtaa 43
>53954_ptc-miRf12132-akr:pmrd
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 ttctgtcggtaaatccgttggtaa 24
|||||||||||| |||||||||||
Sbjct: 33 ttctgtcggtaattccgttggtaa 10
>53780_ptc-miRf11958-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 55 gtcggtaaatccgttggtaa 74
>53755_ptc-miRf11933-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 43 gtcggtaaatccgttggtaa 62
>53754_ptc-miRf11932-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 43 gtcggtaaatccgttggtaa 62
>53508_ptc-miRf11686-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 86 attaccgacggatttaccga 105
||||||||||||||||||||
Sbjct: 8 attaccgacggatttaccga 27
>53495_ptc-miRf11673-akr:pmrd
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 42 gtcggtaaatccgttggtaa 61
>53269_ptc-miRf11447-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 56 gtcggtaaatccgttggtaa 75
>53151_ptc-miRf11329-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 56 gtcggtaaatccgttggtaa 75
>53140_ptc-miRf11318-akr:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttctgtcggtaaatccgttggtaa 24
|||||||||||||| |||||||||
Sbjct: 48 ttctgtcggtaaattcgttggtaa 71
>53139_ptc-miRf11317-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttctgtcggtaaatccgttggtaa 24
|||||||||||||| |||||||||
Sbjct: 56 ttctgtcggtaaattcgttggtaa 79
>53128_ptc-miRf11306-akr:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 122 gtcggtaaatccgttggtaa 103
>52939_ptc-miRf11117-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 87 ttaccgacggatttaccgatggaa 110
||||||||||||||||||| ||||
Sbjct: 27 ttaccgacggatttaccgacggaa 50
>52812_ptc-miRf10990-akr:pmrd
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttctgtcggtaaatccgttggtaa 24
|||||||||||| |||||||||||
Sbjct: 43 ttctgtcggtaattccgttggtaa 66
>52634_ptc-miRf10812-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 55 gtcggtaaatccgttggtaa 74
>52549_ptc-miRf10727-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 55 gtcggtaaatccgttggtaa 74
>52333_ptc-miRf10511-akr:pmrd
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 55 gtcggtaaatccgttggtaa 74
>52246_ptc-miRf10424-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 65 gtcggtaaatccgttggtaa 84
>52136_ptc-miRf10314-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 86 attaccgacggatttaccga 105
||||||||||||||||||||
Sbjct: 62 attaccgacggatttaccga 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 87 ttaccgacggatttaccgatggaa 110
||||||||||||||||||| ||||
Sbjct: 85 ttaccgacggatttaccgacggaa 62
>51929_ptc-miRf10107-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 gtcggtaaatccgttggtaa 24
||||||||||||||||||||
Sbjct: 65 gtcggtaaatccgttggtaa 84
