miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52580_ptc-miRf10758-akr:pmrd
Length = 152
Score = 119 bits (60), Expect = 6e-28
Identities = 117/136 (86%)
Strand = Plus / Plus
Query: 1 tgacagcagttcgttggtgatatacgagtgcctaggggctgtttgggctgttgaatccct 60
|||||||| ||||||| || | | |||| ||||||||||||||||||||| |||||| |
Sbjct: 9 tgacagcatttcgttgatggtttctgagtccctaggggctgtttgggctgtcgaatccgt 68
Query: 61 gcatcacccgtgacagcagttcgttgatgctttctgagtccctaggggctgtttgtgctc 120
|| |||||||||||| || |||||||||| |||||||||||||| ||| |||||| |||
Sbjct: 69 gcgtcacccgtgacaccatttcgttgatgatttctgagtccctaaggggtgtttgggctg 128
Query: 121 tcgaatacatgcgtca 136
|||||| | |||||||
Sbjct: 129 tcgaatccgtgcgtca 144
Score = 97.6 bits (49), Expect = 2e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 64 tcacccgtgacagcagttcgttgatgctttctgagtccctaggggctgtttgtgctctcg 123
||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct: 2 tcacccgtgacagcatttcgttgatggtttctgagtccctaggggctgtttgggctgtcg 61
Query: 124 aatacatgcgtca 136
||| | |||||||
Sbjct: 62 aatccgtgcgtca 74
Score = 44.1 bits (22), Expect = 3e-05
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 1 tgacagcagttcgttggtgatatacgagtgcctaggggctgtttgggctgttgaatccct 60
||||| || ||||||| |||| | |||| |||| ||| |||||||||||| |||||| |
Sbjct: 79 tgacaccatttcgttgatgatttctgagtccctaaggggtgtttgggctgtcgaatccgt 138
Query: 61 gcatcacccgtgac 74
|| |||| ||||||
Sbjct: 139 gcgtcactcgtgac 152
>54242_ptc-miRf12420-akr:pmrd
Length = 104
Score = 109 bits (55), Expect = 5e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 33 taggggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgttgatgctt 92
||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| ||
Sbjct: 12 taggggctgtttgggctgtggaatccatgcgtcacccgtgaaagcagttcgttgatggtt 71
Query: 93 tctgagtccctaggggctgtttg 115
|||||||||| ||||||| ||||
Sbjct: 72 tctgagtcccaaggggctctttg 94
Score = 50.1 bits (25), Expect = 4e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 92 ttctgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
|||||||||| ||||||||||||| ||| | |||| |||||||||
Sbjct: 1 ttctgagtccataggggctgtttgggctgtggaatccatgcgtca 45
>54241_ptc-miRf12419-akr:pmrd
Length = 93
Score = 109 bits (55), Expect = 5e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 33 taggggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgttgatgctt 92
||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| ||
Sbjct: 7 taggggctgtttgggctgtggaatccatgcgtcacccgtgaaagcagttcgttgatggtt 66
Query: 93 tctgagtccctaggggctgtttg 115
|||||||||| ||||||| ||||
Sbjct: 67 tctgagtcccaaggggctctttg 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 97 agtccctaggggctgtttgtgctctcgaatacatgcgtca 136
||||| ||||||||||||| ||| | |||| |||||||||
Sbjct: 1 agtccataggggctgtttgggctgtggaatccatgcgtca 40
>52606_ptc-miRf10784-akr:pmrd
Length = 102
Score = 103 bits (52), Expect = 3e-23
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 53 gaatccctgcatcacccgtgacagcagttcgttgatgctttctgagtccctaggggctgt 112
|||||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 101 gaatccatgcgtcacccgtgacaccagttcgttgattatttctgagtccctaggggctgt 42
Query: 113 ttgtgctctcgaatacatgcgtca 136
||| ||| |||||| |||||||||
Sbjct: 41 ttgggctgtcgaatccatgcgtca 18
Score = 69.9 bits (35), Expect = 5e-13
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 1 tgacagcagttcgttggtgatatacgagtgcctaggggctgtttgggctgttgaatccct 60
||||| |||||||||| | || | |||| ||||||||||||||||||||| |||||| |
Sbjct: 83 tgacaccagttcgttgattatttctgagtccctaggggctgtttgggctgtcgaatccat 24
Query: 61 gcatcacccgtgacagcagttcg 83
|| ||||| |||||| |||||||
Sbjct: 23 gcgtcaccagtgacaccagttcg 1
>52569_ptc-miRf10747-akr:pmrd
Length = 154
Score = 103 bits (52), Expect = 3e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 31 cctaggggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgttgatgc 90
||||||||||||| ||||||| |||||| ||| |||||||||||||||||| |||||||
Sbjct: 75 cctaggggctgttcgggctgtcgaatccatgcgtcacccgtgacagcagttggttgatga 134
Query: 91 tttctgagtccctaggggct 110
|||||||| |||||||||||
Sbjct: 135 tttctgaggccctaggggct 154
Score = 83.8 bits (42), Expect = 3e-17
Identities = 90/106 (84%)
Strand = Plus / Plus
Query: 31 cctaggggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgttgatgc 90
|||||||| |||| | ||||| |||||| ||| |||||||||||||||||| || |||
Sbjct: 5 cctaggggttgttcgagctgtcgaatccatgcgtcacccgtgacagcagttggtgaatga 64
Query: 91 tttctgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
||||||| |||||||||||||| | ||| |||||| |||||||||
Sbjct: 65 attctgaggccctaggggctgttcgggctgtcgaatccatgcgtca 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 97 agtccctaggggctgtttgtgctctcgaatacatgcgtca 136
|||||||||||| |||| | ||| |||||| |||||||||
Sbjct: 1 agtccctaggggttgttcgagctgtcgaatccatgcgtca 40
>53619_ptc-miRf11797-akr:pmrd
Length = 113
Score = 97.6 bits (49), Expect = 2e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 26 gagtgcctaggggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgtt 85
|||| ||||||||||||||||||| | ||| || ||| ||||||||||||||||||||||
Sbjct: 10 gagtccctaggggctgtttgggctatcgaacccatgcgtcacccgtgacagcagttcgtt 69
Query: 86 gatgctttctgagtccc 102
|||| ||||||||||||
Sbjct: 70 gatgatttctgagtccc 86
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 95 tgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 9 tgagtccctaggggctgtttgggctatcgaacccatgcgtca 50
>53181_ptc-miRf11359-akr:pmrd
Length = 115
Score = 87.7 bits (44), Expect = 2e-18
Identities = 86/100 (86%)
Strand = Plus / Plus
Query: 37 ggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgttgatgctttctg 96
||||||||| ||||| |||||| ||| ||| ||| || ||||||||||||||| ||||||
Sbjct: 1 ggctgtttgcgctgtcgaatccatgcgtcagccgcgagagcagttcgttgatgatttctg 60
Query: 97 agtccctaggggctgtttgtgctctcgaatacatgcgtca 136
|||||||| |||||||||| ||| ||| || ||| |||||
Sbjct: 61 agtccctacgggctgtttgggctgtcgcatccatccgtca 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 5 agcagttcgttggtgatatacgagtgcctaggggctgtttgggctgt 51
|||||||||||| |||| | |||| |||| ||||||||||||||||
Sbjct: 39 agcagttcgttgatgatttctgagtccctacgggctgtttgggctgt 85
>53522_ptc-miRf11700-akr:pmrd
Length = 142
Score = 85.7 bits (43), Expect = 8e-18
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 26 gagtgcctaggggctgtttgggctgttgaatccctgcatcacccgtgacagcag-ttcgt 84
|||| ||||||||||||||||||||| ||||| |||| ||||||||||| ||| |||||
Sbjct: 142 gagtccctaggggctgtttgggctgtccaatccatgcagcacccgtgacaacagtttcgt 83
Query: 85 tgatgctttctgagtccctaggggctgtttg 115
||||| | | |||||||| ||||||||||||
Sbjct: 82 tgatgatatttgagtcccgaggggctgtttg 52
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 96 gagtccctaggggctgtttgtgctctcgaatacatgc 132
|||||||||||||||||||| ||| || ||| |||||
Sbjct: 142 gagtccctaggggctgtttgggctgtccaatccatgc 106
>54125_ptc-miRf12303-akr:pmrd
Length = 111
Score = 77.8 bits (39), Expect = 2e-15
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 31 cctaggggctgtttgggctgttgaatccctgcatcacccgtgacagcagttcgttgatgc 90
||||||||||||| | ||||| |||||| ||| ||||||||||||| |||| |||||||
Sbjct: 18 cctaggggctgttcgtgctgtggaatccatgcgtcacccgtgacagtagttggttgatga 77
Query: 91 tttctgagtccctaggggctgtt 113
| ||| || ||||||||||||||
Sbjct: 78 tatctcaggccctaggggctgtt 100
Score = 58.0 bits (29), Expect = 2e-09
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 84 ttgatgctttctgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
|||||| ||||| ||||||||||||||||| ||||| | |||| |||||||||
Sbjct: 1 ttgatgatttctcagtccctaggggctgttcgtgctgtggaatccatgcgtca 53
>53523_ptc-miRf11701-akr:pmrd
Length = 122
Score = 73.8 bits (37), Expect = 3e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 36 gggctgtttgggctgttgaatccctgcatcacccgtgacagcag-ttcgttgatgctttc 94
|||||||||||||||| ||||| |||| ||||||||||| ||| |||||||||| | |
Sbjct: 122 gggctgtttgggctgtccaatccatgcagcacccgtgacaacagtttcgttgatgatatt 63
Query: 95 tgagtccctaggggctgtttg 115
|||||||| ||||||||||||
Sbjct: 62 tgagtcccgaggggctgtttg 42
>53524_ptc-miRf11702-akr:pmrd
Length = 120
Score = 71.9 bits (36), Expect = 1e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 37 ggctgtttgggctgttgaatccctgcatcacccgtgacagcag-ttcgttgatgctttct 95
||||||||||||||| ||||| |||| ||||||||||| ||| |||||||||| | | |
Sbjct: 120 ggctgtttgggctgtccaatccatgcagcacccgtgacaacagtttcgttgatgatattt 61
Query: 96 gagtccctaggggctgtttg 115
||||||| ||||||||||||
Sbjct: 60 gagtcccgaggggctgtttg 41
>52135_ptc-miRf10313-akr:pmrd
Length = 116
Score = 58.0 bits (29), Expect = 2e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 80 ttcgttgatgctttctgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
||||||||| |||||||||||||| |||||||||| ||| |||||| |||| ||||
Sbjct: 39 ttcgttgattatttctgagtccctatgggctgtttgcgctgtcgaatccatgtgtca 95
>52102_ptc-miRf10280-akr:pmrd
Length = 113
Score = 58.0 bits (29), Expect = 2e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 80 ttcgttgatgctttctgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
|||||||||| | ||||||||||||||| ||||||| ||| |||||| || ||||||
Sbjct: 15 ttcgttgatgatatctgagtccctagggtctgtttgggctgtcgaatccaagcgtca 71
Score = 54.0 bits (27), Expect = 3e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 10 ttcgttggtgatatacgagtgcctaggggctgtttgggctgttgaatccctgcatcaccc 69
||||||| |||||| |||| ||||||| ||||||||||||| |||||| || ||||||
Sbjct: 15 ttcgttgatgatatctgagtccctagggtctgtttgggctgtcgaatccaagcgtcaccc 74
Query: 70 gtg 72
|||
Sbjct: 75 gtg 77
>52101_ptc-miRf10279-akr:pmrd
Length = 113
Score = 58.0 bits (29), Expect = 2e-09
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 80 ttcgttgatgctttctgagtccctaggggctgtttgtgctctcgaatacatgcgtca 136
|||||||||| | ||||||||||||||| ||||||| ||| |||||| || ||||||
Sbjct: 15 ttcgttgatgatatctgagtccctagggtctgtttgggctgtcgaatccaagcgtca 71
Score = 54.0 bits (27), Expect = 3e-08
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 10 ttcgttggtgatatacgagtgcctaggggctgtttgggctgttgaatccctgcatcaccc 69
||||||| |||||| |||| ||||||| ||||||||||||| |||||| || ||||||
Sbjct: 15 ttcgttgatgatatctgagtccctagggtctgtttgggctgtcgaatccaagcgtcaccc 74
Query: 70 gtg 72
|||
Sbjct: 75 gtg 77
>52574_ptc-miRf10752-akr:pmrd
Length = 75
Score = 40.1 bits (20), Expect = 4e-04
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 80 ttcgttgatgctttctgagtccctaggggctgtttgtgctctcgaatacatg 131
|||||||| | |||||||| || |||||||||||| ||| |||||| ||||
Sbjct: 24 ttcgttgaagatttctgaggccgcaggggctgtttgcgctgtcgaatgcatg 75
>52095_ptc-miRf10273-akr:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 4e-04
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 80 ttcgttgatgctttctgagtccctaggggctgtttgtgctctcgaatacatgcgtc 135
|||||||| | |||||||| || |||||||||||| ||| | |||| ||||||||
Sbjct: 100 ttcgttgaagatttctgaggccgcaggggctgtttgcgctgtagaatgcatgcgtc 155
