miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52506_ptc-miRf10684-akr:pmrd
Length = 101
Score = 115 bits (58), Expect = 6e-27
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct: 100 gttttaccgacggaaacattccgtcggtgtgtgattagaagttcgtcggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
||||||||||||||||||||||| |||||||||||||||
Sbjct: 40 ccgacgtcatcaccgacggattacgtccgtcggctttac 2
>52594_ptc-miRf10772-akr:pmrd
Length = 101
Score = 107 bits (54), Expect = 1e-24
Identities = 86/99 (86%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| ||||||||| ||||||| ||||||||||||||||||||| ||||| |
Sbjct: 100 gttttaccgacggacaaattccgtcggtgtgtgattagaagttcgttggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
||||||||||||||||||||||| |||||||||||||||
Sbjct: 40 ccgacgtcatcaccgacggattacgtccgtcggctttac 2
>53006_ptc-miRf11184-akr:pmrd
Length = 101
Score = 105 bits (53), Expect = 6e-24
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 attccgtcggtgtgtgattagaagttcgtcggtgatttttttaccgacgtcatcaccgac 24
Query: 78 ggattaagtccgtcggctttac 99
||| ||||||||||||||||||
Sbjct: 23 ggaataagtccgtcggctttac 2
>51978_ptc-miRf10156-akr:pmrd
Length = 101
Score = 105 bits (53), Expect = 6e-24
Identities = 73/82 (89%)
Strand = Plus / Minus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 attccgtcggtgtgtgattagaagttcgtcggtgatttttttaccgacgtcatcaccgac 24
Query: 78 ggattaagtccgtcggctttac 99
||| ||||||||||||||||||
Sbjct: 23 ggaataagtccgtcggctttac 2
>53978_ptc-miRf12156-akr:pmrd
Length = 101
Score = 99.6 bits (50), Expect = 4e-22
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| ||||||||| ||||||| ||||||||||||||||||||| ||||| |
Sbjct: 100 gttttaccgacggacaaattccgtcggtgtgtgattagaagttcgttggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
|||||||||||||||||||| ||| ||||||||||||||
Sbjct: 40 ccgacgtcatcaccgacggaataattccgtcggctttac 2
>52674_ptc-miRf10852-akr:pmrd
Length = 103
Score = 99.6 bits (50), Expect = 4e-22
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 3 gttttaccgacggaaaaattccgtcggtgtgtgattagaagttcgtcggtgattttttta 62
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
|||||||||||| |||||||||| |||||||||||||||
Sbjct: 63 ccgacgtcatcatcgacggattacgtccgtcggctttac 101
>52463_ptc-miRf10641-akr:pmrd
Length = 101
Score = 99.6 bits (50), Expect = 4e-22
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| ||||||||| ||||||| ||||||||||||||||||||| ||||| |
Sbjct: 100 gttttaccgacggacaaattccgtcggtgtgtgattagaagttcgttggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
|||||||||||||||||||| ||| ||||||||||||||
Sbjct: 40 ccgacgtcatcaccgacggaataattccgtcggctttac 2
>52251_ptc-miRf10429-akr:pmrd
Length = 105
Score = 99.6 bits (50), Expect = 4e-22
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 102 gttttaccgacggaaaaattccgtcggtgtgtgattagaagttcgtcggtgattttttta 43
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
|||||||||||| |||||||||| |||||||||||||||
Sbjct: 42 ccgacgtcatcatcgacggattacgtccgtcggctttac 4
>52478_ptc-miRf10656-akr:pmrd
Length = 101
Score = 97.6 bits (49), Expect = 1e-21
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 attccgtcggtgtgtgattagaagttcgtcggtgatttttttaccgacgtcatcaccgac 24
Query: 78 ggattaagtccgtcggctttac 99
||| || |||||||||||||||
Sbjct: 23 ggaatacgtccgtcggctttac 2
>51973_ptc-miRf10151-akr:pmrd
Length = 101
Score = 97.6 bits (49), Expect = 1e-21
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 attccgtcggtgtgtgattagaagttcgtcggtgatttttttaccgacgtcatcaccgac 24
Query: 78 ggattaagtccgtcggctttac 99
||| || |||||||||||||||
Sbjct: 23 ggaatacgtccgtcggctttac 2
>52442_ptc-miRf10620-akr:pmrd
Length = 101
Score = 95.6 bits (48), Expect = 6e-21
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| | ||||||| ||||||||||||||||||||||||||| |
Sbjct: 100 gttttaccgacggaacaattccgtcggtgtgtgattagaagttcgtcggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggcttt 97
|||||||||||||| |||||||| || ||||||||||
Sbjct: 40 ccgacgtcatcaccaacggattacgttcgtcggcttt 4
>52439_ptc-miRf10617-akr:pmrd
Length = 101
Score = 95.6 bits (48), Expect = 6e-21
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| ||||||||| ||||||| |||||||||||| ||||||||||||| |
Sbjct: 100 gttttaccgacggacatattccgtctgtgtgtgattagcagttcgtcggtgatttattta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggcttt 97
||||||||||||||||||||||| |||||||||||||
Sbjct: 40 ccgacgtcatcaccgacggattacgtccgtcggcttt 4
>52367_ptc-miRf10545-akr:pmrd
Length = 101
Score = 91.7 bits (46), Expect = 9e-20
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| |||| || ||||||||||||||||||||||||||| |
Sbjct: 100 gttttaccgacggaaaaattctgtcggtgtgtgattagaagttcgtcggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
|||||||||||||||||||| || |||||||||||||||
Sbjct: 40 ccgacgtcatcaccgacggaatacgtccgtcggctttac 2
>51874_ptc-miRf10052-akr:pmrd
Length = 101
Score = 83.8 bits (42), Expect = 2e-17
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| ||||||| ||||| ||||||||||||||||||||| |
Sbjct: 100 gttttaccgacggaaaaattccgtcggtgtatgattagaagttcgtcggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
||||||||||| |||||||| || |||||||||||||||
Sbjct: 40 ccgacgtcatccccgacggaatacgtccgtcggctttac 2
>52666_ptc-miRf10844-akr:pmrd
Length = 101
Score = 81.8 bits (41), Expect = 9e-17
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83 attccgtcggtgtatgattagaagttcgtcggtgatttttttaccgacgtcatcaccgac 24
Query: 78 ggattaagtccgtcggctttac 99
||| || |||||| ||||||||
Sbjct: 23 ggaatacgtccgttggctttac 2
>52160_ptc-miRf10338-akr:pmrd
Length = 99
Score = 79.8 bits (40), Expect = 3e-16
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||
Sbjct: 18 attccgtcggtgtgtgattagacgttcgtcggtgatttttttaccgatgtcatcaccgac 77
Query: 78 ggattaagtccgtcggc 94
|||||| ||||||||||
Sbjct: 78 ggattacgtccgtcggc 94
>52092_ptc-miRf10270-akr:pmrd
Length = 101
Score = 75.8 bits (38), Expect = 5e-15
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| ||||||| ||||| |||||||||||| |||||||| |
Sbjct: 100 gttttaccgacggaaaaattccgtcggtgtatgattagaagtttgtcggtgattttttta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggctttac 99
||||||||||| |||||||| || |||||||||||||||
Sbjct: 40 ccgacgtcatccccgacggaatacgtccgtcggctttac 2
>52479_ptc-miRf10657-akr:pmrd
Length = 101
Score = 63.9 bits (32), Expect = 2e-11
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| ||||||||| ||||||| ||| |||||||| ||||||||||||| |
Sbjct: 100 gttttaccgacggacatattccgtcagtgggtgattagcagttcgtcggtgatttattta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggcttt 97
||||| || |||| ||||||||| |||||||||||||
Sbjct: 40 ccgacatcttcactgacggattacgtccgtcggcttt 4
>52057_ptc-miRf10235-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 78/97 (80%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| |||||||| ||||||| |||||||||||| | ||| ||||||| |
Sbjct: 100 gttttaccgacggaaatattccgtcggtgtgtgattaccatttcatcggtgatttattta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggcttt 97
|||| ||| |||||||||||||| |||||||||||||
Sbjct: 40 ccgatgtcttcaccgacggattacgtccgtcggcttt 4
>51894_ptc-miRf10072-akr:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 5e-09
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 18 attccgttggtgtgtgattagaagttcgtcggtgannnnnnnaccgacgtcatcaccgac 77
||||||| ||||||||||||| |||||||||||| || ||||||||| |||||
Sbjct: 77 attccgtcggtgtgtgattagctgttcgtcggtgatttatttactgacgtcatccccgac 18
Query: 78 ggattaagtccgtcggc 94
||||| ||||||||||
Sbjct: 17 agattacgtccgtcggc 1
>52163_ptc-miRf10341-akr:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 77/97 (79%)
Strand = Plus / Minus
Query: 1 gttttcccgacggacccattccgttggtgtgtgattagaagttcgtcggtgannnnnnna 60
||||| ||||||||| ||||||| ||||||||||||| |||||| |||| |
Sbjct: 100 gttttaccgacggacatattccgtcggtgtgtgattagctattcgtcagtgatttattta 41
Query: 61 ccgacgtcatcaccgacggattaagtccgtcggcttt 97
|| ||||| | |||||||||||| ||||||| |||||
Sbjct: 40 ccaacgtcttaaccgacggattacgtccgtcagcttt 4
>53688_ptc-miRf11866-akr:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 cgacggattaagtccgtcgg 93
||||||||||||||||||||
Sbjct: 117 cgacggattaagtccgtcgg 136
>53409_ptc-miRf11587-akr:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 cgacggattaagtccgtcgg 93
||||||||||||||||||||
Sbjct: 117 cgacggattaagtccgtcgg 136
>53041_ptc-miRf11219-akr:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 cgacggattaagtccgtcgg 93
||||||||||||||||||||
Sbjct: 117 cgacggattaagtccgtcgg 136
>52710_ptc-miRf10888-akr:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 cgacggattaagtccgtcgg 93
||||||||||||||||||||
Sbjct: 119 cgacggattaagtccgtcgg 138
