miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54319_ptc-miRf12497-akr:pmrd
Length = 156
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 67
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 127
Query: 121 ccaatagtcttggatgtg 138
||||||||||||||||||
Sbjct: 128 ccaatagtcttggatgtg 145
>52364_ptc-miRf10542-akr:pmrd
Length = 140
Score = 242 bits (122), Expect = 6e-65
Identities = 134/138 (97%)
Strand = Plus / Plus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2 tatacccaagagtctcgggtttggttgcaacgcctgacctaagagtgatatttataatat 61
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 taataataacattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 121
Query: 121 ccaatagtcttggatgtg 138
||||||||||||||||||
Sbjct: 122 ccaatagtcttggatgtg 139
>53794_ptc-miRf11972-akr:pmrd
Length = 154
Score = 218 bits (110), Expect = 8e-58
Identities = 131/138 (94%)
Strand = Plus / Plus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
|||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10 tatatccaagagtctcgggtttgactgcaacgcctgacctaagagtgatatttataatat 69
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 70 taataataacattaaacttgcatgacccaagtttaaatgggtctagctgcaatactagac 129
Query: 121 ccaatagtcttggatgtg 138
|||||| |||||||||||
Sbjct: 130 ccaataatcttggatgtg 147
>52538_ptc-miRf10716-akr:pmrd
Length = 140
Score = 172 bits (87), Expect = 4e-44
Identities = 123/135 (91%)
Strand = Plus / Plus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
|||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 2 tatatccaagaatcttgggtttggctgcaacgtctgaccctagagtaatatttataatat 61
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 62 taataataacattaaacttgcatgacccaagtttaagtgggcttggctgcaataccagac 121
Query: 121 ccaatagtcttggat 135
|||||| |||||||
Sbjct: 122 ccaataaccttggat 136
>52129_ptc-miRf10307-akr:pmrd
Length = 140
Score = 172 bits (87), Expect = 4e-44
Identities = 123/135 (91%)
Strand = Plus / Plus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
|||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 2 tatatccaagaatcttgggtttggctgcaacgtctgaccctagagtaatatttataatat 61
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 62 taataataacattaaacttgcatgacccaagtttaagtgggcttggctgcaataccagac 121
Query: 121 ccaatagtcttggat 135
|||||| |||||||
Sbjct: 122 ccaataaccttggat 136
>52158_ptc-miRf10336-akr:pmrd
Length = 139
Score = 170 bits (86), Expect = 2e-43
Identities = 123/134 (91%), Gaps = 1/134 (0%)
Strand = Plus / Minus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
||||||||||| |||||| ||||||| ||||| | |||| |||||| |||||||||||||
Sbjct: 138 tatacccaagagtcttggatttggctacaacgtc-gacccaagagtaatatttataatat 80
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
| ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 79 ttataataacattaaacttgcatgacccaagtttaagtgggtctaactgcaataccagac 20
Query: 121 ccaatagtcttgga 134
||||||||||||||
Sbjct: 19 ccaatagtcttgga 6
>53293_ptc-miRf11471-akr:pmrd
Length = 150
Score = 153 bits (77), Expect = 4e-38
Identities = 122/137 (89%)
Strand = Plus / Plus
Query: 1 tatacccaagaatcttgggtttggctgcaacgcctgacctaagagtgatatttataatat 60
|||| ||||||| ||||||| || ||||| ||||||||| |||||| |||||| ||||||
Sbjct: 7 tatatccaagaaccttgggtctgactgcagcgcctgacccaagagtaatatttttaatat 66
Query: 61 taataataatattaaacttgcatgacccaagtttaaatgggtctagctgcaataccagac 120
||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||
Sbjct: 67 taataataatattaaacttgcatgatccaagtttaaatgggtctgattgcaacaccagac 126
Query: 121 ccaatagtcttggatgt 137
||| ||||||||||||
Sbjct: 127 tcaagagtcttggatgt 143
>53890_ptc-miRf12068-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 cccaagaatcttgggtttggctgcaac 31
|||||||| ||||||||||||||||||
Sbjct: 27 cccaagaaccttgggtttggctgcaac 1
>53033_ptc-miRf11211-akr:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 cccaagaatcttgggtttggctgcaac 31
|||||||| ||||||||||||||||||
Sbjct: 68 cccaagaaccttgggtttggctgcaac 94
>52907_ptc-miRf11085-akr:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 98 tgggtctagctgcaataccagacccaatagtcttg 132
|||||||||||||||| |||| |||||| ||||||
Sbjct: 60 tgggtctagctgcaatgccaggcccaattgtcttg 94
>52405_ptc-miRf10583-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 cccaagaatcttgggtttggctgcaac 31
|||||||| ||||||||||||||||||
Sbjct: 47 cccaagaaccttgggtttggctgcaac 21
>52404_ptc-miRf10582-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 cccaagaatcttgggtttggctgcaac 31
|||||||| ||||||||||||||||||
Sbjct: 27 cccaagaaccttgggtttggctgcaac 1
