miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53558_ptc-miRf11736-akr:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 1 tccgtcggtaaggccgtcggtagacac 27
|||||||||||||||||||||||||||
Sbjct: 30 tccgtcggtaaggccgtcggtagacac 4
>52657_ptc-miRf10835-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccgtcggtaaggccgtcggta 22
||||||||||||||||||||||
Sbjct: 69 tccgtcggtaaggccgtcggta 90
>52655_ptc-miRf10833-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccgtcggtaaggccgtcggta 22
||||||||||||||||||||||
Sbjct: 69 tccgtcggtaaggccgtcggta 90
>53684_ptc-miRf11862-akr:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 43 gtcagtagttaccgacggaattgcggac 70
|||||||||||||||| ||||| |||||
Sbjct: 39 gtcagtagttaccgactgaattacggac 12
>54344_ptc-miRf12522-akr:pmrd
Length = 145
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>54300_ptc-miRf12478-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>54260_ptc-miRf12438-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>54222_ptc-miRf12400-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>54032_ptc-miRf12210-akr:pmrd
Length = 146
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 44 gtagttaccgactgaattacggacgga 70
>54031_ptc-miRf12209-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>54012_ptc-miRf12190-akr:pmrd
Length = 148
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 5 gtagttaccgactgaattacggacgga 31
>53917_ptc-miRf12095-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53845_ptc-miRf12023-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53822_ptc-miRf12000-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53586_ptc-miRf11764-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53571_ptc-miRf11749-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53565_ptc-miRf11743-akr:pmrd
Length = 102
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 37 aattcagtcagtagttaccgacggaat 63
||||||||||||| ||||||||||||
Sbjct: 85 aattcagtcagtaactaccgacggaat 59
>53538_ptc-miRf11716-akr:pmrd
Length = 146
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53529_ptc-miRf11707-akr:pmrd
Length = 148
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 5 gtagttaccgactgaattacggacgga 31
>53511_ptc-miRf11689-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53385_ptc-miRf11563-akr:pmrd
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 31 gtagttaccgactgaattacggacgga 57
>53384_ptc-miRf11562-akr:pmrd
Length = 103
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 42 gtagttaccgactgaattacggacgga 68
>53366_ptc-miRf11544-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53365_ptc-miRf11543-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>53133_ptc-miRf11311-akr:pmrd
Length = 145
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>52996_ptc-miRf11174-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 35 gtagttaccgactgaattacggacgga 9
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 71 gtagttaccgactgaattacggacgga 97
>52690_ptc-miRf10868-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>52629_ptc-miRf10807-akr:pmrd
Length = 77
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||| ||||||||||||| ||||||||
Sbjct: 49 gtaggtaccgacggaattacggacgga 75
>52416_ptc-miRf10594-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
>52142_ptc-miRf10320-akr:pmrd
Length = 106
Score = 38.2 bits (19), Expect = 8e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 47 gtagttaccgacggaattgcggacgga 73
|||||||||||| ||||| ||||||||
Sbjct: 4 gtagttaccgactgaattacggacgga 30
