miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52574_ptc-miRf10752-akr:pmrd
Length = 75
Score = 125 bits (63), Expect = 5e-30
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 6 catgcgtcaccaggggaagcagtttcgttgaaggtttctgaggccgcacgggctgtttgc 65
||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1 catgcgtcaccagtggaagcagtttcgttgaagatttctgaggccgcaggggctgtttgc 60
Query: 66 gctgtcgaatgcatg 80
|||||||||||||||
Sbjct: 61 gctgtcgaatgcatg 75
>52668_ptc-miRf10846-akr:pmrd
Length = 121
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcgttgaaggtttctgaggccgcacgggctg 60
|||||||||||||||| | ||||||||||||||||| | ||| | ||||| |||||||||
Sbjct: 19 gaatgcatgcgtcacccgtggaagcagtttcgttgatgattttttaggccccacgggctg 78
Query: 61 tttgcgctgtcgaatgcatgcgtc 84
||||||||||||||||||||||||
Sbjct: 79 tttgcgctgtcgaatgcatgcgtc 102
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 gctgtttgcgctgtcgaatgcatgcgtc 84
||||||||||||||||||||||||||||
Sbjct: 4 gctgtttgcgctgtcgaatgcatgcgtc 31
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcg 32
|||||||||||||||||| |||||||||||||
Sbjct: 90 gaatgcatgcgtcaccagtggaagcagtttcg 121
>52095_ptc-miRf10273-akr:pmrd
Length = 155
Score = 111 bits (56), Expect = 8e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcgttgaaggtttctgaggccgcacgggctg 60
|||| ||| ||||||||| |||||| |||||||||||| |||||||||||||| ||||||
Sbjct: 72 gaatccattcgtcaccagtggaagctgtttcgttgaagatttctgaggccgcaggggctg 131
Query: 61 tttgcgctgtcgaatgcatgcgtc 84
|||||||||| |||||||||||||
Sbjct: 132 tttgcgctgtagaatgcatgcgtc 155
Score = 95.6 bits (48), Expect = 5e-21
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcgttgaaggtttctgaggccgcacgggctg 60
|||||||||||||||||| ||||||||||||||||||| ||||||||||| | || |||
Sbjct: 1 gaatgcatgcgtcaccagtggaagcagtttcgttgaagatttctgaggcccaagggcctg 60
Query: 61 tttgcgctgtcgaatgcatgcgtc 84
||| ||||||||||| ||| ||||
Sbjct: 61 tttacgctgtcgaatccattcgtc 84
>52115_ptc-miRf10293-akr:pmrd
Length = 155
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 25 cagtttcgttgaaggtttctgaggccgcacgggctgtttgcgctgtcgaatgcatgcgtc 84
|||||||||||| | ||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct: 78 cagtttcgttgatgatttctgaggccccatgggctgtttgcgctgtcgaatccatgcgtc 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 gggctgtttgcgctgtcgaatgcatgc 81
|||||||||||||||||||||||||||
Sbjct: 2 gggctgtttgcgctgtcgaatgcatgc 28
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttc 31
|||| ||||||||||||| ||||||||||||
Sbjct: 125 gaatccatgcgtcaccagtggaagcagtttc 155
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcgttga 36
|||||||||| ||||| | |||| ||||||||||||
Sbjct: 19 gaatgcatgcttcacctgtggaaccagtttcgttga 54
>53181_ptc-miRf11359-akr:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 56 ggctgtttgcgctgtcgaatgcatgcgtc 84
|||||||||||||||||||| ||||||||
Sbjct: 1 ggctgtttgcgctgtcgaatccatgcgtc 29
Score = 40.1 bits (20), Expect = 2e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 29 ttcgttgaaggtttctgaggccgcacgggctgtttgcgctgtcg 72
|||||||| | |||||||| || |||||||||||| |||||||
Sbjct: 44 ttcgttgatgatttctgagtccctacgggctgtttgggctgtcg 87
>52135_ptc-miRf10313-akr:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 25 cagtttcgttgaaggtttctgaggccgcacgggctgtttgcgctgtcgaatgcatg 80
|||||||||||| |||||||| || | ||||||||||||||||||||| ||||
Sbjct: 35 cagtttcgttgattatttctgagtccctatgggctgtttgcgctgtcgaatccatg 90
>52508_ptc-miRf10686-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 65/78 (83%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 8 tgcgtcaccaggggaagca-gtttcgttgaaggtttctgaggccgcacgggctgtttgcg 66
||||||||||| ||||||| | |||||||| | ||| |||| || || ||||| ||||||
Sbjct: 1 tgcgtcaccagtggaagcaggattcgttgatgatttatgagcccacatgggctctttgcg 60
Query: 67 ctgtcgaatgcatgcgtc 84
|| |||||| | ||||||
Sbjct: 61 ctttcgaatccgtgcgtc 78
>54242_ptc-miRf12420-akr:pmrd
Length = 104
Score = 38.2 bits (19), Expect = 0.001
Identities = 41/47 (87%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcgttgaaggtttctgag 47
|||| ||||||||||| | | |||||| |||||||| ||||||||||
Sbjct: 32 gaatccatgcgtcacccgtgaaagcag-ttcgttgatggtttctgag 77
>54241_ptc-miRf12419-akr:pmrd
Length = 93
Score = 38.2 bits (19), Expect = 0.001
Identities = 41/47 (87%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 gaatgcatgcgtcaccaggggaagcagtttcgttgaaggtttctgag 47
|||| ||||||||||| | | |||||| |||||||| ||||||||||
Sbjct: 27 gaatccatgcgtcacccgtgaaagcag-ttcgttgatggtttctgag 72
