miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52124_ptc-miRf10302-akr:pmrd
Length = 113
Score = 224 bits (113), Expect = 1e-59
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1 ctcttgggtccggcgttaggacccaagactaatgaatcttgcattagcacccaatgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcttgggtccggcgttaggacccaagactaatgaatcttgcattagcacccaatgctct 60
Query: 61 tgggttcggtatcaagattgaattctttggggtccagcgtcaagacccaaggg 113
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggttcggtatcaagattgaattctttggggtccagcgtcaagacccaaggg 113
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ctcttgggtccggcgttaggacccaag 27
||||||||||| |||||||||||||||
Sbjct: 93 ctcttgggtccagcgttaggacccaag 119
>52793_ptc-miRf10971-akr:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 23 ccaagactaatgaatcttgcattagcacccaatgctcttgggt 65
||||| |||||||||||||||| || ||||||| ||||||||
Sbjct: 79 ccaaggctaatgaatcttgcatcagaacccaattttcttgggt 37
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctcttgggtccggcgttaggacc 23
|||||||||||||||||||||||
Sbjct: 78 ctcttgggtccggcgttaggacc 100
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ctcttgggtccggcgttaggacc 23
|||||||||||||||||||||||
Sbjct: 78 ctcttgggtccggcgttaggacc 100
>53241_ptc-miRf11419-akr:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 36 atcttgcattagcacccaatgctcttgggt 65
||||||| |||| |||||||||||||||||
Sbjct: 49 atcttgctttagtacccaatgctcttgggt 78
>54314_ptc-miRf12492-akr:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 5 tgggtccggcgttaggacccaagactaatgaatcttg 41
||||||| || | |||||||||||||||| |||||||
Sbjct: 47 tgggtcctgcatgaggacccaagactaataaatcttg 83
