miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcc 60
Query: 61 tgtgtcaggacccaattctcttgggtccggcgttaggacc 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtgtcaggacccaattctcttgggtccggcgttaggacc 100
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 12 agaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcctgtgtcaggac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcctgtgtcaggac 64
Query: 72 ccaattctcttgggtccggcg 92
|||||||||||||||||||||
Sbjct: 65 ccaattctcttgggtccggcg 85
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 103 bits (52), Expect = 2e-23
Identities = 88/100 (88%)
Strand = Plus / Plus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcggaggaaccaattctcacgggtcc 60
|||| |||||||| |||||||| ||||||||||||| ||||| | |||||||| ||||||
Sbjct: 6 ggtcttgcgtcaggacccaagggtaatgggtcctgcagaggacctaattctcatgggtcc 65
Query: 61 tgtgtcaggacccaattctcttgggtccggcgttaggacc 100
|| |||| ||| ||||||||||||||| ||||| ||||||
Sbjct: 66 tgcgtcaagactcaattctcttgggtctggcgtcaggacc 105
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 67.9 bits (34), Expect = 1e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 55 gggtcctgtgtcaggacccaattctcttgggtccggcgttaggacc 100
|||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct: 70 gggtcctgcgtcaggatccaattctcttgggtccagcgttaggacc 115
>54348_ptc-miRf12526-akr:pmrd
Length = 88
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 44 ccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgttagg 97
||||||||| ||| |||||||||||||||||||||||| |||| || ||||||
Sbjct: 11 ccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttagg 64
>52476_ptc-miRf10654-akr:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 2 gtcctgcgtcagaacccaaggctaatgggtcctgcggagg 41
||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 40 gtcctgcttcaggacccaagactaatgggtcctgcggagg 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 64 gtcaggacccaattctcttgggtc 87
|||| |||||||||||||||||||
Sbjct: 89 gtcaagacccaattctcttgggtc 66
>52276_ptc-miRf10454-akr:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 caggacccaattctcttgggtccgg 90
|||||||||||||||||||||||||
Sbjct: 62 caggacccaattctcttgggtccgg 86
>52208_ptc-miRf10386-akr:pmrd
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 gggtcctgtgtcaggacccaattct 79
|||||||||||||||||||||||||
Sbjct: 2 gggtcctgtgtcaggacccaattct 26
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgc 36
|||| |||||||| |||||||| |||||||||||||
Sbjct: 52 ggtcttgcgtcaggacccaagggtaatgggtcctgc 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 34 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgt 93
||||||||| ||||||||| ||||| || ||| | ||||||||||||||||| ||||
Sbjct: 2 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 61
Query: 94 taggacc 100
||||||
Sbjct: 62 caggacc 68
>52677_ptc-miRf10855-akr:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 tgtgtcaggacccaattctcttgggtcc 88
||||||||||||||||| ||||||||||
Sbjct: 52 tgtgtcaggacccaattttcttgggtcc 79
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgc 36
|||| |||||||| |||||||| |||||||||||||
Sbjct: 37 ggtcttgcgtcaggacccaagggtaatgggtcctgc 2
Score = 46.1 bits (23), Expect = 5e-06
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 34 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgt 93
||||||||| ||||||||| ||||| || ||| | ||||||||||||||||| ||||
Sbjct: 87 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 28
Query: 94 taggacc 100
||||||
Sbjct: 27 caggacc 21
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgc 36
|||| |||||||| |||||||| |||||||||||||
Sbjct: 37 ggtcttgcgtcaggacccaagggtaatgggtcctgc 2
Score = 46.1 bits (23), Expect = 5e-06
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 34 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgt 93
||||||||| ||||||||| ||||| || ||| | ||||||||||||||||| ||||
Sbjct: 87 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 28
Query: 94 taggacc 100
||||||
Sbjct: 27 caggacc 21
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgc 36
|||| |||||||| |||||||| |||||||||||||
Sbjct: 37 ggtcttgcgtcaggacccaagggtaatgggtcctgc 2
Score = 46.1 bits (23), Expect = 5e-06
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 34 tgcggaggaaccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgt 93
||||||||| ||||||||| ||||| || ||| | ||||||||||||||||| ||||
Sbjct: 87 tgcggaggacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgt 28
Query: 94 taggacc 100
||||||
Sbjct: 27 caggacc 21
>52012_ptc-miRf10190-akr:pmrd
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 16 cccaaggctaatgggtcctgcggaggaaccaa 47
||||||||||||||||||||| ||||| ||||
Sbjct: 47 cccaaggctaatgggtcctgcagaggacccaa 16
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 ggacccaattctcttgggtc 87
||||||||||||||||||||
Sbjct: 78 ggacccaattctcttgggtc 59
>54273_ptc-miRf12451-akr:pmrd
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 aggacccaattctcttgggtccggcgt 93
|||||| ||||||||||||||||||||
Sbjct: 8 aggacctaattctcttgggtccggcgt 34
>53674_ptc-miRf11852-akr:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 55 gggtcctgtgtcaggacccaattctcttgggtccg 89
||||||| |||||||||||| |||||||| |||||
Sbjct: 47 gggtcctatgtcaggacccatttctcttgagtccg 81
>52662_ptc-miRf10840-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctcttgggtccggcgttaggacc 100
|||||||||||||||||||||||
Sbjct: 1 ctcttgggtccggcgttaggacc 23
>52124_ptc-miRf10302-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 ctcttgggtccggcgttaggacc 100
|||||||||||||||||||||||
Sbjct: 1 ctcttgggtccggcgttaggacc 23
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 5e-06
Identities = 72/87 (82%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 15 acccaaggctaatgggtcctgcgg-aggaaccaattctcacgggtcctgtgtcaggaccc 73
|||||||| | |||||||||||| |||| ||||| || | |||||||| || | ||| |
Sbjct: 134 acccaaggttcatgggtcctgcgttaggacccaatgctaatgggtcctgagttatgacac 75
Query: 74 aattctcttgggtccggcgttaggacc 100
||| || ||| ||||||||||||||||
Sbjct: 74 aatgcttttgagtccggcgttaggacc 48
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctg 35
|||||||||| || |||||| ||||||||||||||
Sbjct: 120 ggtcctgcgttaggacccaatgctaatgggtcctg 86
>54217_ptc-miRf12395-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 tgtcaggacccaattctcttgggtcc 88
|||||||||||||||| |||||||||
Sbjct: 7 tgtcaggacccaattcgcttgggtcc 32
>52780_ptc-miRf10958-akr:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 59 cctgtgtcaggacccaattctcttgggtcc 88
|||||||||||||||| ||| |||||||||
Sbjct: 1 cctgtgtcaggacccatttcgcttgggtcc 30
>52177_ptc-miRf10355-akr:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 63 tgtcaggacccaattctcttgggtcc 88
|||||||||||||||| |||||||||
Sbjct: 93 tgtcaggacccaattcgcttgggtcc 68
>51960_ptc-miRf10138-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 caggacccaattctcttgggtc 87
||||||||||||||||||||||
Sbjct: 69 caggacccaattctcttgggtc 90
>54156_ptc-miRf12334-akr:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcg 37
||||||||||||| |||||||| |||||||| ||||
Sbjct: 13 ggtcctgcgtcaggacccaagggcaatgggtcttgcg 49
>53373_ptc-miRf11551-akr:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcg 37
||||||||||||| |||||||| |||||||| ||||
Sbjct: 42 ggtcctgcgtcaggacccaagggcaatgggtcttgcg 6
>52558_ptc-miRf10736-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcg 37
||||||||||||| |||||||| |||||||| ||||
Sbjct: 59 ggtcctgcgtcaggacccaagggcaatgggtcttgcg 95
>52456_ptc-miRf10634-akr:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 55 gggtcctgtgtcaggacccaattctcttgggtc 87
||||||| | ||| |||||||||||||||||||
Sbjct: 38 gggtcctctatcaagacccaattctcttgggtc 6
>52143_ptc-miRf10321-akr:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1 ggtcctgcgtcagaacccaaggctaatgggtcctgcg 37
||||||||||||| |||||||| |||||||| ||||
Sbjct: 38 ggtcctgcgtcaggacccaagggcaatgggtcttgcg 2
>54111_ptc-miRf12289-akr:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 tcaggacccaattctcttgg 84
||||||||||||||||||||
Sbjct: 38 tcaggacccaattctcttgg 57
>53676_ptc-miRf11854-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 15 acccaaggctaatgggtcctgcggaggaaccaattctcacgggtcctgtgtcaggaccca 74
|||||| | ||||||||||||| |||| |||| || | ||||||||| | ||||||||
Sbjct: 26 acccaatggtaatgggtcctgcacaggacccaagtccaatgggtcctgtctaaggaccca 85
Query: 75 attc 78
||||
Sbjct: 86 attc 89
>53675_ptc-miRf11853-akr:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 15 acccaaggctaatgggtcctgcggaggaaccaattctcacgggtcctgtgtcaggaccca 74
|||||| | ||||||||||||| |||| |||| || | ||||||||| | ||||||||
Sbjct: 26 acccaatggtaatgggtcctgcacaggacccaagtccaatgggtcctgtctaaggaccca 85
Query: 75 attc 78
||||
Sbjct: 86 attc 89
>53125_ptc-miRf11303-akr:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 57 gtcctgtgtcaggacccaattctcttgggtccggcgttaggacc 100
|||||| || |||||||||||||| | ||||| | |||||||||
Sbjct: 93 gtcctgcgtaaggacccaattctcataggtcctgtgttaggacc 50
