miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52115_ptc-miRf10293-akr:pmrd
Length = 155
Score = 123 bits (62), Expect = 3e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 43 cagtttcgttgatgattttttaggccccacgggctgtttgcgctgtcgaatgcatgcgtc 102
|||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||
Sbjct: 78 cagtttcgttgatgatttctgaggccccatgggctgtttgcgctgtcgaatccatgcgtc 137
Query: 103 accagtggaagcagtttc 120
||||||||||||||||||
Sbjct: 138 accagtggaagcagtttc 155
Score = 91.7 bits (46), Expect = 1e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttt 61
||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||
Sbjct: 4 gctgtttgcgctgtcgaatgcatgcttcacctgtggaaccagtttcgttgatgatttt 61
Score = 75.8 bits (38), Expect = 7e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttc 49
||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 110 gctgtttgcgctgtcgaatccatgcgtcaccagtggaagcagtttc 155
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 73 gggctgtttgcgctgtcgaatgcatgcgtcaccagtggaagcagtttcg 121
||||||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 2 gggctgtttgcgctgtcgaatgcatgcttcacctgtggaaccagtttcg 50
>52095_ptc-miRf10273-akr:pmrd
Length = 155
Score = 117 bits (59), Expect = 2e-27
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 19 gaatgcatgcgtcacccgtggaagcagtttcgttgatgattttttaggccccacgggctg 78
|||||||||||||||| ||||||||||||||||||| ||||| | |||||| | || |||
Sbjct: 1 gaatgcatgcgtcaccagtggaagcagtttcgttgaagatttctgaggcccaagggcctg 60
Query: 79 tttgcgctgtcgaatgcatgcgtcaccagtggaagcagtttcg 121
||| ||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 61 tttacgctgtcgaatccattcgtcaccagtggaagctgtttcg 103
Score = 107 bits (54), Expect = 2e-24
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 5 ctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttta 64
|||||| ||||||||||| ||| ||||||| |||||||| |||||||||| ||||| | |
Sbjct: 58 ctgtttacgctgtcgaatccattcgtcaccagtggaagctgtttcgttgaagatttctga 117
Query: 65 ggccccacgggctgtttgcgctgtcgaatgcatgcgtc 102
|||| || |||||||||||||||| |||||||||||||
Sbjct: 118 ggccgcaggggctgtttgcgctgtagaatgcatgcgtc 155
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtc 31
|||||||||||||| |||||||||||||
Sbjct: 128 gctgtttgcgctgtagaatgcatgcgtc 155
>52658_ptc-miRf10836-akr:pmrd
Length = 84
Score = 111 bits (56), Expect = 1e-25
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 19 gaatgcatgcgtcacccgtggaagcagtttcgttgatgattttttaggccccacgggctg 78
|||||||||||||||| | ||||||||||||||||| | ||| | ||||| |||||||||
Sbjct: 1 gaatgcatgcgtcaccaggggaagcagtttcgttgaaggtttctgaggccgcacgggctg 60
Query: 79 tttgcgctgtcgaatgcatgcgtc 102
||||||||||||||||||||||||
Sbjct: 61 tttgcgctgtcgaatgcatgcgtc 84
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 90 gaatgcatgcgtcaccagtggaagcagtttcg 121
|||||||||||||||||| |||||||||||||
Sbjct: 1 gaatgcatgcgtcaccaggggaagcagtttcg 32
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtc 31
||||||||||||||||||||||||||||
Sbjct: 57 gctgtttgcgctgtcgaatgcatgcgtc 84
>52574_ptc-miRf10752-akr:pmrd
Length = 75
Score = 101 bits (51), Expect = 1e-22
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 24 catgcgtcacccgtggaagcagtttcgttgatgattttttaggccccacgggctgtttgc 83
||||||||||| ||||||||||||||||||| ||||| | ||||| || |||||||||||
Sbjct: 1 catgcgtcaccagtggaagcagtttcgttgaagatttctgaggccgcaggggctgtttgc 60
Query: 84 gctgtcgaatgcatg 98
|||||||||||||||
Sbjct: 61 gctgtcgaatgcatg 75
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 95 catgcgtcaccagtggaagcagtttcg 121
|||||||||||||||||||||||||||
Sbjct: 1 catgcgtcaccagtggaagcagtttcg 27
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatg 27
||||||||||||||||||||||||
Sbjct: 52 gctgtttgcgctgtcgaatgcatg 75
>53181_ptc-miRf11359-akr:pmrd
Length = 115
Score = 79.8 bits (40), Expect = 4e-16
Identities = 86/100 (86%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
||||||||||||||||||| ||||||||| ||| | ||||| |||||||||||||| |
Sbjct: 2 gctgtttgcgctgtcgaatccatgcgtcagccgcgagagcag-ttcgttgatgatttctg 60
Query: 64 aggccccacgggctgtttgcgctgtcgaatgcatgcgtca 103
|| ||| |||||||||||| ||||||| || ||| |||||
Sbjct: 61 agtccctacgggctgtttgggctgtcgcatccatccgtca 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 74 ggctgtttgcgctgtcgaatgcatgcgtca 103
|||||||||||||||||||| |||||||||
Sbjct: 1 ggctgtttgcgctgtcgaatccatgcgtca 30
>52135_ptc-miRf10313-akr:pmrd
Length = 116
Score = 79.8 bits (40), Expect = 4e-16
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 29 gtcacccgtggaagcagtttcgttgatgattttttaggccccacgggctgtttgcgctgt 88
||||| |||||| ||||||||||||| |||| | || ||| | ||||||||||||||||
Sbjct: 21 gtcacacgtggactcagtttcgttgattatttctgagtccctatgggctgtttgcgctgt 80
Query: 89 cgaatgcatgcgtcaccagtggaagcagtttc 120
||||| |||| |||||| ||||||||| ||||
Sbjct: 81 cgaatccatgtgtcacccgtggaagcattttc 112
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttc 49
||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct: 67 gctgtttgcgctgtcgaatccatgtgtcacccgtggaagcattttc 112
>52606_ptc-miRf10784-akr:pmrd
Length = 102
Score = 71.9 bits (36), Expect = 1e-13
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 18 cgaatgcatgcgtcacccgtggaagcagtttcgttgatgattttttaggccccacgggct 77
||||| ||||||||||||||| | ||||| ||||||| |||| | || ||| | |||||
Sbjct: 102 cgaatccatgcgtcacccgtgacaccagtt-cgttgattatttctgagtccctaggggct 44
Query: 78 gtttgcgctgtcgaatgcatgcgtcaccagtg 109
||||| |||||||||| |||||||||||||||
Sbjct: 43 gtttgggctgtcgaatccatgcgtcaccagtg 12
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacc 34
|||||||| |||||||||| |||||||||||
Sbjct: 46 gctgtttgggctgtcgaatccatgcgtcacc 16
>52102_ptc-miRf10280-akr:pmrd
Length = 113
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 5 ctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgat 58
||||||| |||||||||| || |||||||||||||| | |||||||||||||||
Sbjct: 44 ctgtttgggctgtcgaatccaagcgtcacccgtggatggagtttcgttgatgat 97
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 33 cccgtggaagcagtttcgttgatgattttttaggccccacgggctgtttgcgctgtcgaa 92
|||||||| ||||||||||||||||| | | || ||| | || ||||||| |||||||||
Sbjct: 1 cccgtggatgcagtttcgttgatgatatctgagtccctagggtctgtttgggctgtcgaa 60
Query: 93 tgcatgcgtcaccagtggaagcagtttcg 121
| || |||||||| ||||| | |||||||
Sbjct: 61 tccaagcgtcacccgtggatggagtttcg 89
>52101_ptc-miRf10279-akr:pmrd
Length = 113
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 5 ctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgat 58
||||||| |||||||||| || |||||||||||||| | |||||||||||||||
Sbjct: 44 ctgtttgggctgtcgaatccaagcgtcacccgtggatggagtttcgttgatgat 97
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 33 cccgtggaagcagtttcgttgatgattttttaggccccacgggctgtttgcgctgtcgaa 92
|||||||| ||||||||||||||||| | | || ||| | || ||||||| |||||||||
Sbjct: 1 cccgtggatgcagtttcgttgatgatatctgagtccctagggtctgtttgggctgtcgaa 60
Query: 93 tgcatgcgtcaccagtggaagcagtttcg 121
| || |||||||| ||||| | |||||||
Sbjct: 61 tccaagcgtcacccgtggatggagtttcg 89
>52580_ptc-miRf10758-akr:pmrd
Length = 152
Score = 65.9 bits (33), Expect = 6e-12
Identities = 85/101 (84%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||||| |||||||||| | ||||||||||||| | || ||||||||||||||| |
Sbjct: 46 gctgtttgggctgtcgaatccgtgcgtcacccgtgacacca-tttcgttgatgatttctg 104
Query: 64 aggccccacgggctgtttgcgctgtcgaatgcatgcgtcac 104
|| ||| | ||| |||||| |||||||||| | ||||||||
Sbjct: 105 agtccctaaggggtgtttgggctgtcgaatccgtgcgtcac 145
Score = 50.1 bits (25), Expect = 4e-07
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 29 gtcacccgtggaagcagtttcgttgatgattttttaggccccacgggctgtttgcgctgt 88
|||||||||| |||| ||||||||||| ||| | || ||| | |||||||||| |||||
Sbjct: 1 gtcacccgtgacagca-tttcgttgatggtttctgagtccctaggggctgtttgggctgt 59
Query: 89 cgaatgcatgcgtcacc 105
||||| | |||||||||
Sbjct: 60 cgaatccgtgcgtcacc 76
>52569_ptc-miRf10747-akr:pmrd
Length = 154
Score = 60.0 bits (30), Expect = 4e-10
Identities = 88/106 (83%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 13 gctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgattttttaggccccac 72
|||||||||| ||||||||||||||| ||||||| || |||| || | |||||| |
Sbjct: 21 gctgtcgaatccatgcgtcacccgtgacagcagttg-gtgaatgaattctgaggccctag 79
Query: 73 gggctgtttgcgctgtcgaatgcatgcgtcaccagtggaagcagtt 118
|||||||| | |||||||||| ||||||||||| ||| |||||||
Sbjct: 80 gggctgttcgggctgtcgaatccatgcgtcacccgtgacagcagtt 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||| | |||||||||| ||||||||||||||| ||||| || ||||||||||| |
Sbjct: 82 gctgttcgggctgtcgaatccatgcgtcacccgtgacagcag-ttggttgatgatttctg 140
Query: 64 aggccc 69
||||||
Sbjct: 141 aggccc 146
>54242_ptc-miRf12420-akr:pmrd
Length = 104
Score = 58.0 bits (29), Expect = 2e-09
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatg 56
|||||||| ||||| |||| ||||||||||||||| |||||| ||||||||||
Sbjct: 17 gctgtttgggctgtggaatccatgcgtcacccgtgaaagcag-ttcgttgatg 68
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gggctgtttgcgctgtcgaatgcatgcgtcaccagtggaagcagtt 118
|||||||||| ||||| |||| ||||||||||| ||| ||||||||
Sbjct: 15 gggctgtttgggctgtggaatccatgcgtcacccgtgaaagcagtt 60
>54241_ptc-miRf12419-akr:pmrd
Length = 93
Score = 58.0 bits (29), Expect = 2e-09
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatg 56
|||||||| ||||| |||| ||||||||||||||| |||||| ||||||||||
Sbjct: 12 gctgtttgggctgtggaatccatgcgtcacccgtgaaagcag-ttcgttgatg 63
Score = 52.0 bits (26), Expect = 1e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gggctgtttgcgctgtcgaatgcatgcgtcaccagtggaagcagtt 118
|||||||||| ||||| |||| ||||||||||| ||| ||||||||
Sbjct: 10 gggctgtttgggctgtggaatccatgcgtcacccgtgaaagcagtt 55
>52508_ptc-miRf10686-akr:pmrd
Length = 91
Score = 58.0 bits (29), Expect = 2e-09
Identities = 75/89 (84%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 26 tgcgtcacccgtggaagcagt-ttcgttgatgattttttaggccccacgggctgtttgcg 84
||||||||| |||||||||| |||||||||||||| | || || || ||||| ||||||
Sbjct: 1 tgcgtcaccagtggaagcaggattcgttgatgatttatgagcccacatgggctctttgcg 60
Query: 85 ctgtcgaatgcatgcgtcaccagtggaag 113
|| |||||| | |||||||| |||||||
Sbjct: 61 ctttcgaatccgtgcgtcactcgtggaag 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 97 tgcgtcaccagtggaagcag 116
||||||||||||||||||||
Sbjct: 1 tgcgtcaccagtggaagcag 20
>53524_ptc-miRf11702-akr:pmrd
Length = 120
Score = 56.0 bits (28), Expect = 6e-09
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||||| |||||| ||| ||||| |||||||| | |||||||||||||||| |||
Sbjct: 119 gctgtttgggctgtccaatccatgcagcacccgtgacaacagtttcgttgatgatatttg 60
Query: 64 aggccccacgggctgtttgc 83
|| ||| | |||||||||||
Sbjct: 59 agtcccgaggggctgtttgc 40
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagca 44
|||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 2 gctgattgcgctgtcaaatccatgcctcacccgtggaagca 42
>53523_ptc-miRf11701-akr:pmrd
Length = 122
Score = 56.0 bits (28), Expect = 6e-09
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||||| |||||| ||| ||||| |||||||| | |||||||||||||||| |||
Sbjct: 120 gctgtttgggctgtccaatccatgcagcacccgtgacaacagtttcgttgatgatatttg 61
Query: 64 aggccccacgggctgtttgc 83
|| ||| | |||||||||||
Sbjct: 60 agtcccgaggggctgtttgc 41
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagca 44
|||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 3 gctgattgcgctgtcaaatccatgcctcacccgtggaagca 43
>53522_ptc-miRf11700-akr:pmrd
Length = 142
Score = 56.0 bits (28), Expect = 6e-09
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||||| |||||| ||| ||||| |||||||| | |||||||||||||||| |||
Sbjct: 130 gctgtttgggctgtccaatccatgcagcacccgtgacaacagtttcgttgatgatatttg 71
Query: 64 aggccccacgggctgtttgc 83
|| ||| | |||||||||||
Sbjct: 70 agtcccgaggggctgtttgc 51
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagca 44
|||| |||||||||| ||| ||||| |||||||||||||||
Sbjct: 13 gctgattgcgctgtcaaatccatgcctcacccgtggaagca 53
>53619_ptc-miRf11797-akr:pmrd
Length = 113
Score = 52.0 bits (26), Expect = 1e-07
Identities = 76/90 (84%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||||| ||| ||||| ||||||||||||||| ||||| |||||||||||||| |
Sbjct: 22 gctgtttgggctatcgaacccatgcgtcacccgtgacagcag-ttcgttgatgatttctg 80
Query: 64 aggccccacgggctgtttgcgctgtcgaat 93
|| ||| || ||||||| | ||||||||||
Sbjct: 81 agtcccgac-ggctgttggggctgtcgaat 109
>54125_ptc-miRf12303-akr:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 72/88 (81%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 4 gctgtttgcgctgtcgaatgcatgcgtcacccgtggaagcagtttcgttgatgatttttt 63
|||||| | ||||| |||| ||||||||||||||| || || || ||||||||| | |
Sbjct: 25 gctgttcgtgctgtggaatccatgcgtcacccgtgacagtag-ttggttgatgatatctc 83
Query: 64 aggccccacgggctgtttgcgctgtcga 91
|||||| | |||||||| | ||||||||
Sbjct: 84 aggccctaggggctgttcgggctgtcga 111
