miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52249_ptc-miRf10427-akr:pmrd
Length = 120
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 cctcgtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cctcgtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagc 56
Query: 61 ttaaaacacacaagatagtatagagcaagcaaggggtcaatcccacaagg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ttaaaacacacaagatagtatagagcaagcaaggggtcaatcccacaagg 6
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 gtgggatcaaccccttgtttgctctatactat 36
||||||| |||||||| ||||||||||||||
Sbjct: 10 gtgggattgaccccttgcttgctctatactat 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 75 atagtatagagcaagcaaggggtcaatcccac 106
|||||||||||||| |||||||| |||||||
Sbjct: 80 atagtatagagcaaacaaggggttgatcccac 111
>52671_ptc-miRf10849-akr:pmrd
Length = 102
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 5 gtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagcttaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagcttaa 60
Query: 65 aacacacaagatagtatagagcaagcaaggggtcaatcccac 106
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacacacaagatagtatagagcaagcaaggggtcaatcccac 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 75 atagtatagagcaagcaaggggtcaatcccac 106
|||||||||||||| |||||||| |||||||
Sbjct: 32 atagtatagagcaaacaaggggttgatcccac 1
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 5 gtgggatcaaccccttgtttgctctatactat 36
||||||| |||||||| ||||||||||||||
Sbjct: 102 gtgggattgaccccttgcttgctctatactat 71
>51957_ptc-miRf10135-akr:pmrd
Length = 277
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 attaattaccctagcttaaaacaca 70
||||||||||||||||| |||||||
Sbjct: 40 attaattaccctagcttcaaacaca 16
