miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52670_ptc-miRf10848-akr:pmrd
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 gtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagcttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagcttaa 64
Query: 61 aacacacaagatagtatagagcaagcaaggggtcaatcccac 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aacacacaagatagtatagagcaagcaaggggtcaatcccac 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 71 atagtatagagcaagcaaggggtcaatcccac 102
|||||||||||||| |||||||| |||||||
Sbjct: 36 atagtatagagcaaacaaggggttgatcccac 5
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1 gtgggatcaaccccttgtttgctctatactat 32
||||||| |||||||| ||||||||||||||
Sbjct: 106 gtgggattgaccccttgcttgctctatactat 75
>52249_ptc-miRf10427-akr:pmrd
Length = 120
Score = 202 bits (102), Expect = 4e-53
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 1 gtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagcttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtgggatcaaccccttgtttgctctatactatttagttcagattaattaccctagcttaa 52
Query: 61 aacacacaagatagtatagagcaagcaaggggtcaatcccac 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 aacacacaagatagtatagagcaagcaaggggtcaatcccac 10
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 gtgggatcaaccccttgtttgctctatactat 32
||||||| |||||||| ||||||||||||||
Sbjct: 10 gtgggattgaccccttgcttgctctatactat 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 71 atagtatagagcaagcaaggggtcaatcccac 102
|||||||||||||| |||||||| |||||||
Sbjct: 80 atagtatagagcaaacaaggggttgatcccac 111
>51957_ptc-miRf10135-akr:pmrd
Length = 277
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 42 attaattaccctagcttaaaacaca 66
||||||||||||||||| |||||||
Sbjct: 40 attaattaccctagcttcaaacaca 16
