miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53610_ptc-miRf11788-akr:pmrd
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 tacattgtctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacattgtctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcag 60
Query: 61 ctttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtgtg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtgtg 118
>52355_ptc-miRf10533-akr:pmrd
Length = 112
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 46 tctgcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaattagcattcgc 105
|||||||||||| ||| ||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 44 tctgcagcgaattagcattcgctgccgaaactgagtcttctgcagcgaattagcattcgc 103
Query: 106 tgtcgaaa 113
|| |||||
Sbjct: 104 tgccgaaa 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 67 ctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaa 113
||||||||| ||||| |||| ||||||||||||||||||| |||||
Sbjct: 27 ctgccgaaactgagtcttctgcagcgaattagcattcgctgccgaaa 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 8 tctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcagctttcgc 67
||||||||||||||| |||||||| ||| | || |||||||||||| ||| |||||
Sbjct: 44 tctgcagcgaattagcattcgctgccgaaactgagtcttctgcagcgaattagcattcgc 103
Query: 68 tgccgaaa 75
||||||||
Sbjct: 104 tgccgaaa 111
>52207_ptc-miRf10385-akr:pmrd
Length = 112
Score = 77.8 bits (39), Expect = 2e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 47 ctgcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaattagcattcgct 106
||||||||||| ||| ||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 45 ctgcagcgaattagcattcgctgccgaaactgagtcttctgcagcgaattagcattcgct 104
Query: 107 gtcgaaa 113
| |||||
Sbjct: 105 gccgaaa 111
Score = 46.1 bits (23), Expect = 6e-06
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 9 ctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcagctttcgct 68
|||||||||||||| |||||||| ||| | || |||||||||||| ||| ||||||
Sbjct: 45 ctgcagcgaattagcattcgctgccgaaactgagtcttctgcagcgaattagcattcgct 104
Query: 69 gccgaaa 75
|||||||
Sbjct: 105 gccgaaa 111
>54055_ptc-miRf12233-akr:pmrd
Length = 113
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 47 ctgcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaatt 96
||||||||||| ||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 45 ctgcagcgaattagcattcgctgccgaaactgagttgtctgcagcgaatt 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaa 113
||||||||||||| || || ||| ||||||||||||||||||| |||||
Sbjct: 23 ttcgctgccgaaactgtgtcagctgcagcgaattagcattcgctgccgaaa 73
Score = 42.1 bits (21), Expect = 9e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 9 ctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaat 57
|||||||||||||| |||||||| ||| | ||||||||||||||||
Sbjct: 45 ctgcagcgaattagcattcgctgccgaaactgagttgtctgcagcgaat 93
>52242_ptc-miRf10420-akr:pmrd
Length = 144
Score = 65.9 bits (33), Expect = 6e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 96 ttcgctgccgaaattgagttgcatgcagcgaattagcattcgctg 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctgcagcgaattagtgttcgctgctgaagtt 39
||||||||||||||| |||||||||||||||
Sbjct: 1 tctgcagcgaattagaattcgctgctgaagtt 32
>53972_ptc-miRf12150-akr:pmrd
Length = 86
Score = 60.0 bits (30), Expect = 4e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 44 tgtctgcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaattagcattc 103
||||||||||||||| || |||||||| ||||||| ||||| | ||||||| | |||||
Sbjct: 8 tgtctgcagcgaatccgcattcgctgctgaaattgtgttgttcgcagcgaatcaacattc 67
Query: 104 gctgtcgaaa 113
||||| ||||
Sbjct: 68 gctgttgaaa 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 6 tgtctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcagctttc 65
|||||||||||||| | |||||||||||| || |||||| ||||||||||| | |||
Sbjct: 8 tgtctgcagcgaatccgcattcgctgctgaaattgtgttgttcgcagcgaatcaacattc 67
Query: 66 gctg 69
||||
Sbjct: 68 gctg 71
>53008_ptc-miRf11186-akr:pmrd
Length = 166
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
||||||||||||| | ||||||||| ||||||||||| |||||||
Sbjct: 156 ttcgctgccgaaactaagttgtctgcagcgaattagctttcgctg 112
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 42 gttgtctgcagcgaatcagctttcgctgc 70
|||||||||||||||| ||||||||||||
Sbjct: 139 gttgtctgcagcgaattagctttcgctgc 111
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 71 cgaaattgagttgtctgtagcgaattagcattc 103
||||| ||||||||||| |||||||||| ||||
Sbjct: 33 cgaaactgagttgtctgcagcgaattagaattc 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 5 ttgtctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaat 57
|||||||||||||||||| |||||||| ||| || ||| ||||||||||||
Sbjct: 138 ttgtctgcagcgaattagctttcgctgcggaa-ttgtgtgttctgcagcgaat 87
>52237_ptc-miRf10415-akr:pmrd
Length = 147
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 67 ctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
|||||||||||||||||| || |||||||||| ||||||||
Sbjct: 101 ctgccgaaattgagttgtttgcagcgaattagtattcgctg 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 5 ttgtctgcagcgaattagtgttcgctgctgaa 36
|||| |||||||||||||| ||||||||||||
Sbjct: 115 ttgtttgcagcgaattagtattcgctgctgaa 146
>54315_ptc-miRf12493-akr:pmrd
Length = 83
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 77 tgagttgtctgtagcgaattagcattcgctgtcgaa 112
||||||||||| ||||||||||||||||||| ||||
Sbjct: 3 tgagttgtctgcagcgaattagcattcgctgccgaa 38
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 42 gttgtctgcagcgaatcagctttcgctgccgaa 74
|||||||||||||||| ||| ||||||||||||
Sbjct: 6 gttgtctgcagcgaattagcattcgctgccgaa 38
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 ttgtctgcagcgaattagtgttcgctgc 32
|||||||||||||||||| ||||||||
Sbjct: 7 ttgtctgcagcgaattagcattcgctgc 34
>53971_ptc-miRf12149-akr:pmrd
Length = 104
Score = 56.0 bits (28), Expect = 6e-09
Identities = 73/88 (82%)
Strand = Plus / Plus
Query: 8 tctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcagctttcgc 67
|||||||||||| ||| |||||||||||| || ||||| |||||||||| | ||| |
Sbjct: 1 tctgcagcgaatcagtattcgctgctgaaattgtgttggtcacagcgaatcaacattcac 60
Query: 68 tgccgaaattgagttgtctgtagcgaat 95
|| |||||||| ||||||| |||||||
Sbjct: 61 tgtcgaaattgtgttgtctacagcgaat 88
>52150_ptc-miRf10328-akr:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 6e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 49 gcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaatt 96
||||||||| ||| ||||||||||||| |||||||||| ||||||||
Sbjct: 1 gcagcgaattagcattcgctgccgaaacggagttgtctgcagcgaatt 48
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 agcgaattagcattcgctgtcgaaa 113
||||||||||||||||||| |||||
Sbjct: 3 agcgaattagcattcgctgccgaaa 27
>52311_ptc-miRf10489-akr:pmrd
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 50 cagcgaatcagct-ttcgctgccgaaattgagttgtctgtagcgaat 95
||||||||||| | |||||||||||| ||| ||||||||||||||||
Sbjct: 104 cagcgaatcaggtgttcgctgccgaatttgtgttgtctgtagcgaat 58
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 22 gtgttcgctgctgaagttctgttgtctgcagcgaatcag 60
||||||||||| ||| || ||||||||| ||||||||||
Sbjct: 93 gtgttcgctgccgaatttgtgttgtctgtagcgaatcag 55
>54063_ptc-miRf12241-akr:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 9e-08
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 25 ttcgctgctgaagttctgttgtctgcagcgaatcagctttcgctgccgaa 74
|||||||||||| || ||||| ||||||||||| || |||||||||||||
Sbjct: 87 ttcgctgctgaa-ttgtgttgcctgcagcgaatgagttttcgctgccgaa 39
>52783_ptc-miRf10961-akr:pmrd
Length = 103
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 66 gctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
|||||||||| |||||| |||| || ||||||||||||||||
Sbjct: 22 gctgccgaaactgagttctctgcagtgaattagcattcgctg 63
>52615_ptc-miRf10793-akr:pmrd
Length = 76
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 42 gttgtctgcagcgaatcagctttcgctgcc 71
||||||||| ||||||||||||||||||||
Sbjct: 40 gttgtctgccgcgaatcagctttcgctgcc 69
Score = 44.1 bits (22), Expect = 2e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtg 116
||||||||||||| |||||||||| |||||| ||| ||||||| | ||||||
Sbjct: 23 ttcgctgccgaaaccgagttgtctgccgcgaatcagctttcgctgccaaaagtg 76
>52175_ptc-miRf10353-akr:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 66 gctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
||||| ||||||||||||| || ||||||||| |||||||||
Sbjct: 60 gctgctgaaattgagttgtttgcagcgaattaacattcgctg 101
>52174_ptc-miRf10352-akr:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 66 gctgccgaaattgagttgtctgtagcgaattagcattcgctg 107
||||| ||||||||||||| || ||||||||| |||||||||
Sbjct: 60 gctgctgaaattgagttgtttgcagcgaattaacattcgctg 101
>54011_ptc-miRf12189-akr:pmrd
Length = 158
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 84 tctgtagcgaattagcattcgctgtcgaa 112
|||| ||||||||||||||||||||||||
Sbjct: 10 tctgcagcgaattagcattcgctgtcgaa 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaaagtgtg 118
||||||||||||| || || | ||| ||| ||||||||||||||| ||||| ||||
Sbjct: 65 ttcgctgccgaaactgcgtcggctgcagcaaattagcattcgctgccgaaactgtg 120
>53970_ptc-miRf12148-akr:pmrd
Length = 109
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 42 gttgtctgcagcgaatcagctttcgctgccgaa 74
||||||||||||||| ||| |||||||||||||
Sbjct: 76 gttgtctgcagcgaaccagttttcgctgccgaa 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 cgaaattgagttgtctgtagcgaa 94
||||||||||||||||| ||||||
Sbjct: 67 cgaaattgagttgtctgcagcgaa 90
>53387_ptc-miRf11565-akr:pmrd
Length = 109
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 42 gttgtctgcagcgaatcagctttcgctgccgaa 74
||||||||||||||| ||| |||||||||||||
Sbjct: 76 gttgtctgcagcgaaccagttttcgctgccgaa 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 cgaaattgagttgtctgtagcgaa 94
||||||||||||||||| ||||||
Sbjct: 67 cgaaattgagttgtctgcagcgaa 90
>53359_ptc-miRf11537-akr:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 ttcgctgccgaaattgagttgtctg 87
|||||||||||||||||||||||||
Sbjct: 25 ttcgctgccgaaattgagttgtctg 49
>52564_ptc-miRf10742-akr:pmrd
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaa 94
||||||||||||| ||||||||||| ||||||
Sbjct: 58 ttcgctgccgaaactgagttgtctgcagcgaa 89
>54030_ptc-miRf12208-akr:pmrd
Length = 79
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 tgagttgtctgtagcgaattagcattcgctg 107
|||||||| || |||||||||||||||||||
Sbjct: 1 tgagttgtttgcagcgaattagcattcgctg 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 5 ttgtctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatc 58
|||| ||||||||||||| |||||||||||| || ||| |||||||||||||
Sbjct: 5 ttgtttgcagcgaattagcattcgctgctgaa-ttgtgtgttctgcagcgaatc 57
>53989_ptc-miRf12167-akr:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 6e-06
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 49 gcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaat 95
|||| ||||||| ||||||||||| ||||| | ||||||||||||||
Sbjct: 1 gcagtgaatcagttttcgctgccg-aattgtggtgtctgtagcgaat 46
>52234_ptc-miRf10412-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 44 tgtctgcagcgaatcagctttcgctgccgaa 74
|||| |||||||||||| |||||||||||||
Sbjct: 37 tgtccgcagcgaatcagttttcgctgccgaa 67
>53975_ptc-miRf12153-akr:pmrd
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 79 agttgtctgtagcgaattagcattcgctgtcgaa 112
||||||| | ||||||||||||||||||| ||||
Sbjct: 1 agttgtccgcagcgaattagcattcgctgccgaa 34
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 42 gttgtctgcagcgaatcagctttcgctgccgaa 74
|||||| ||||||||| ||| ||||||||||||
Sbjct: 2 gttgtccgcagcgaattagcattcgctgccgaa 34
>53007_ptc-miRf11185-akr:pmrd
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 53/62 (85%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 47 ctgcagcgaatcagctttcgctgccgaaattgagttgtctgtagcgaattagcattcgct 106
|||||||||||||| ||||||||| | ||||| ||||| ||||||||| || ||||||
Sbjct: 1 ctgcagcgaatcagttttcgctgctg-aattgtgttgttcgtagcgaatatgctttcgct 59
Query: 107 gt 108
||
Sbjct: 60 gt 61
Score = 42.1 bits (21), Expect = 9e-05
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 9 ctgcagcgaattagtgttcgctgctgaagttctgttgtctgcagcgaatcagctttcgct 68
||||||||||| ||| |||||||||||| || |||||| | ||||||| |||||||||
Sbjct: 1 ctgcagcgaatcagttttcgctgctgaa-ttgtgttgttcgtagcgaatatgctttcgct 59
Query: 69 g 69
|
Sbjct: 60 g 60
>54190_ptc-miRf12368-akr:pmrd
Length = 143
Score = 42.1 bits (21), Expect = 9e-05
Identities = 43/49 (87%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 64 tcgctgccgaaattgagttgtctgtagcgaattagcattcgctgtcgaa 112
|||||||| ||| |||||| ||| ||||||||||||||||||| ||||
Sbjct: 143 tcgctgccaaaactgagttc-ctgcagcgaattagcattcgctgccgaa 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 45/52 (86%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 63 ttcgctgccgaaattgagttgtctgtagcgaattagc-attcgctgtcgaaa 113
|||||||||||| |||||| || || |||||||| || |||||||| |||||
Sbjct: 69 ttcgctgccgaagttgagtggtttgcagcgaatttgcgattcgctgccgaaa 18
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 47 ctgcagcgaatcagctttcgctgccgaa 74
||||||||||| ||| ||||||||||||
Sbjct: 123 ctgcagcgaattagcattcgctgccgaa 96
>54142_ptc-miRf12320-akr:pmrd
Length = 75
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 79 agttgtctgtagcgaattagcattcgctg 107
||||||| | |||||||||||||||||||
Sbjct: 1 agttgtccgcagcgaattagcattcgctg 29
>53082_ptc-miRf11260-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 9e-05
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 5 ttgtctgcagcgaattag-tgttcgctgctgaagttctgttgtctgcagcgaatcag 60
||||| ||||||||| || ||||| |||| ||| || ||||||| ||||||||||||
Sbjct: 92 ttgtccgcagcgaatcaggtgttcactgcggaatttgtgttgtccgcagcgaatcag 36
Score = 40.1 bits (20), Expect = 4e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 25 ttcgctgctgaagttctgttgtctgcagcgaatcag 60
|||||||||||| || ||||||| ||||||||||||
Sbjct: 109 ttcgctgctgaa-ttgtgttgtccgcagcgaatcag 75
