miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53911_ptc-miRf12089-akr:pmrd
Length = 104
Score = 198 bits (100), Expect = 6e-52
Identities = 103/104 (99%)
Strand = Plus / Plus
Query: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagcatgctgctg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagtatgctgctg 60
Query: 61 cactgttcctaattaattagcaggaagagtgcagattgctgcac 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactgttcctaattaattagcaggaagagtgcagattgctgcac 104
Score = 71.9 bits (36), Expect = 9e-14
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 3 gcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagcatgctgc 58
||||||| ||||||| ||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 58 gcagcatactgcactattcattctaattaattagcatgaacagtgcagcatgctgc 3
Score = 46.1 bits (23), Expect = 5e-06
Identities = 87/107 (81%), Gaps = 6/107 (5%)
Strand = Plus / Minus
Query: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagcatgctgctg 60
|||||||| ||||||| ||| |||||||||||||| ||| ||||||||| | |||
Sbjct: 104 gtgcagcaatctgcactcttcctgctaattaattag---gaacagtgcagcagcatactg 48
Query: 61 cactgttc---ctaattaattagcaggaagagtgcagattgctgcac 104
|||| ||| |||||||||||||| ||| ||||||| ||||||||
Sbjct: 47 cactattcattctaattaattagcatgaacagtgcagcatgctgcac 1
>52715_ptc-miRf10893-akr:pmrd
Length = 98
Score = 115 bits (58), Expect = 6e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 12 tgcactgttcatgctaattaattagaatgaatagtgcagcatgctgctgcactgttccta 71
||||||||||||||||||||||||| | ||||||||||||| |||||||||||| |||
Sbjct: 10 tgcactgttcatgctaattaattagcaggaatagtgcagca---tgctgcactgttacta 66
Query: 72 attaattagcaggaagagtgcagattgctgca 103
||||||||||||||| ||||||| ||||||||
Sbjct: 67 attaattagcaggaatagtgcagcttgctgca 98
Score = 65.9 bits (33), Expect = 5e-12
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgca 49
||||||||||||||||| ||| |||||||||||||| ||||| ||||||
Sbjct: 58 gtgcagcatgctgcactattcctgctaattaattagcatgaacagtgca 10
Score = 56.0 bits (28), Expect = 5e-09
Identities = 51/58 (87%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagcatgctgc 58
||||||||||||||||||| | |||||||||||| | |||||||||||| ||||||
Sbjct: 43 gtgcagcatgctgcactgt---tactaattaattagcaggaatagtgcagcttgctgc 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 69 ctaattaattagcaggaagagtgcagattgctgcac 104
|||||||||||||||||| ||||||| ||||||||
Sbjct: 23 ctaattaattagcaggaatagtgcagcatgctgcac 58
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2 tgcagcatgctgcactgttcatgctaattaattag 36
||||||| |||||||| ||| ||||||||||||||
Sbjct: 98 tgcagcaagctgcactattcctgctaattaattag 64
>52716_ptc-miRf10894-akr:pmrd
Length = 79
Score = 75.8 bits (38), Expect = 6e-15
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 40 gaatagtgcagcatgctgctgcactgttcctaattaattagcaggaagagtgcagattgc 99
||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 6 gaatagtgcagcatgct---gcactgttactaattaattagcaggaatagtgcagcttgc 62
Query: 100 tgca 103
||||
Sbjct: 63 tgca 66
Score = 56.0 bits (28), Expect = 5e-09
Identities = 51/58 (87%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 1 gtgcagcatgctgcactgttcatgctaattaattagaatgaatagtgcagcatgctgc 58
|||||||||||||||||||| |||||||||||| | |||||||||||| ||||||
Sbjct: 11 gtgcagcatgctgcactgtta---ctaattaattagcaggaatagtgcagcttgctgc 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 2 tgcagcatgctgcactgttcatgctaattaattag 36
||||||| |||||||| ||| ||||||||||||||
Sbjct: 66 tgcagcaagctgcactattcctgctaattaattag 32
>54301_ptc-miRf12479-akr:pmrd
Length = 64
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcagcatgctgcactgttc 21
|||||||||||||||||||||
Sbjct: 10 gtgcagcatgctgcactgttc 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tgaatagtgcagcatgctgc 58
||||||||||||||||||||
Sbjct: 4 tgaatagtgcagcatgctgc 23
>53787_ptc-miRf11965-akr:pmrd
Length = 64
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gtgcagcatgctgcactgttc 21
|||||||||||||||||||||
Sbjct: 10 gtgcagcatgctgcactgttc 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tgaatagtgcagcatgctgc 58
||||||||||||||||||||
Sbjct: 4 tgaatagtgcagcatgctgc 23
