miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51806_ptc-miR530a:pmrd
Length = 144
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 aacatgttgcctttatctgcatttgcacctgcaccttacttgtttctttcttttgttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aacatgttgcctttatctgcatttgcacctgcaccttacttgtttctttcttttgttttt 63
Query: 61 gactccaaaaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gactccaaaaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggt 123
Query: 121 gcaggtgaatgccatgtt 138
||||||||||||||||||
Sbjct: 124 gcaggtgaatgccatgtt 141
>52848_ptc-miRf11026-akr:pmrd
Length = 124
Score = 246 bits (124), Expect = 4e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 9 gcctttatctgcatttgcacctgcaccttacttgtttctttcttttgtttttgactccaa 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgcaccttacttgtttctttcttttgtttttgactccaa 60
Query: 69 aaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggtgcaggtga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaccaaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggtgcaggtga 120
Query: 129 atgc 132
||||
Sbjct: 121 atgc 124
>51904_ptc-miRf10082-akr:pmrd
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 12 tttatctgcatttgcacctgcaccttacttgtttctttcttttgtttttgactccaaaac 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatctgcatttgcacctgcaccttacttgtttctttcttttgtttttgactccaaaac 60
Query: 72 caaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggtgcaggtgaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaaagtaagtttgaaacattaaaacaagcttgaggtgcaggtgcaggtgcaggtgaa 118
>51807_ptc-miR530b:pmrd
Length = 172
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 4 atgttgcctttatctgcatttgcacctgca 33
||||||||||||||||||||||||||||||
Sbjct: 7 atgttgcctttatctgcatttgcacctgca 36
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 102 ttgaggtgcaggtgcaggtgcaggtgaatgccat 135
|||||||||||||||| |||||||||||||||||
Sbjct: 133 ttgaggtgcaggtgcaagtgcaggtgaatgccat 166
>53341_ptc-miRf11519-akr:pmrd
Length = 152
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 102 ttgaggtgcaggtgcaggtgcaggtgaatgc 132
|||||||||||||||| ||||||||||||||
Sbjct: 122 ttgaggtgcaggtgcaagtgcaggtgaatgc 152
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcctttatctgcatttgcacctgca 33
|||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgca 25
>49892_osa-miRf10677-akr:pmrd
Length = 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgcatttgcacctgcacct 36
||||||||||||||||||||
Sbjct: 8 ctgcatttgcacctgcacct 27
