miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52513_ptc-miRf10691-akr:pmrd
Length = 128
Score = 52.0 bits (26), Expect = 8e-08
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 31 cacgttagcttggacttggctgactgtcagatccaagtgccttgggtcta 80
||||||| |||||||||||||||| |||| ||||||| | |||||||||
Sbjct: 53 cacgttatcttggacttggctgacagtcaagtccaagttctttgggtcta 4
>53393_ptc-miRf11571-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 33 cgttagcttggacttggctgactgtcagatccaagtgccttgggtctaacatgtttacca 92
||||| ||||||||||||| | ||||| ||||| | |||||||| | |||||||| ||
Sbjct: 34 cgttaccttggacttggctaaatgtcaagtccaattaccttgggtttgacatgtttgtca 93
Query: 93 gacctacatt 102
|||| |||||
Sbjct: 94 gacccacatt 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 66 agtgccttgggtctaacatgtttaccagacct 97
|||||||||||||| |||||||| |||||||
Sbjct: 1 agtgccttgggtctgacatgtttgtcagacct 32
>52699_ptc-miRf10877-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 52 gactgtcagatccaagtgccttgggtctaacatg 85
|||||||||| |||||| |||||||||||||||
Sbjct: 100 gactgtcagacccaagtcgcttgggtctaacatg 67
>53884_ptc-miRf12062-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 55 tgtcagatccaagtgccttgggtct 79
||||||||||||||| |||||||||
Sbjct: 65 tgtcagatccaagtgtcttgggtct 41
>53883_ptc-miRf12061-akr:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 55 tgtcagatccaagtgccttgggtct 79
||||||||||||||| |||||||||
Sbjct: 65 tgtcagatccaagtgtcttgggtct 41
>53741_ptc-miRf11919-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 tgtcagatccaagtgccttgg 75
|||||||||||||||||||||
Sbjct: 17 tgtcagatccaagtgccttgg 37
>52300_ptc-miRf10478-akr:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 71 cttgggtctaacatgtttaccagaccta 98
|||||||||||||| ||||||||||||
Sbjct: 84 cttgggtctaacattgttaccagaccta 57
>52299_ptc-miRf10477-akr:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 71 cttgggtctaacatgtttaccagaccta 98
|||||||||||||| ||||||||||||
Sbjct: 84 cttgggtctaacattgttaccagaccta 57
>52194_ptc-miRf10372-akr:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 71 cttgggtctaacatgtttaccagaccta 98
|||||||||||||| ||||||||||||
Sbjct: 84 cttgggtctaacattgttaccagaccta 57
