miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>53243_ptc-miRf11421-akr:pmrd
          Length = 91

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 gcttggcagccagacccaacacg 32
          |||||||||||||||||||||||
Sbjct: 9  gcttggcagccagacccaacacg 31

>53330_ptc-miRf11508-akr:pmrd
          Length = 73

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 3  gggtctcgcttggcagccagacccaa 28
          ||||||||||||| ||||||||||||
Sbjct: 71 gggtctcgcttggtagccagacccaa 46

>53792_ptc-miRf11970-akr:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 3  gggtctcgcttggcagccagaccc 26
          |||||||||| |||||||||||||
Sbjct: 94 gggtctcgctgggcagccagaccc 71

>53791_ptc-miRf11969-akr:pmrd
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 3  gggtctcgcttggcagccagaccc 26
          |||||||||| |||||||||||||
Sbjct: 86 gggtctcgctgggcagccagaccc 63