miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52412_ptc-miRf10590-akr:pmrd
Length = 118
Score = 216 bits (109), Expect = 3e-57
Identities = 115/117 (98%)
Strand = Plus / Minus
Query: 2 tggggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaat 61
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 117 tggggagtaagctctcaatctcacccaaaggcatccaacattctcattatttgaagcaat 58
Query: 62 tactataaactgagatattggaagcctctgagggagattgggagcttctccaaccat 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 tactataaactgagatattggaagcctctgagggagattgggagcttctccaaccat 1
>53039_ptc-miRf11217-akr:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 5 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 60
Query: 65 tataaactgagatattggaagcctctgagggagattgggagcttctcc 112
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tataaactgagatattggaagcctctgagggagattgggagcttctcc 108
>52413_ptc-miRf10591-akr:pmrd
Length = 108
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 5 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 64
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 108 ggagtaagctctcaatctcacccaaaggcatccaacattctcattatttgaagcaattac 49
Query: 65 tataaactgagatattggaagcctctgagggagattgggagcttctcc 112
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 tataaactgagatattggaagcctctgagggagattgggagcttctcc 1
>53040_ptc-miRf11218-akr:pmrd
Length = 99
Score = 196 bits (99), Expect = 3e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 10 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 60
Query: 70 actgagatattggaagcctctgagggagattgggagctt 108
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgagatattggaagcctctgagggagattgggagctt 99
>51777_ptc-miR477a:pmrd
Length = 85
Score = 168 bits (85), Expect = 6e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 17 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 26
Query: 77 tattggaagcctctgagggagattg 101
|||||||||||||||||||||||||
Sbjct: 25 tattggaagcctctgagggagattg 1
>51778_ptc-miR477b:pmrd
Length = 85
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 17 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 76
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 85 caatctcacccaaaggcatccaacattctcattatttgaagcaattactataaactgaga 26
Query: 77 tattggaagcctctgagggagattg 101
|||||||||||||||||||||||||
Sbjct: 25 tattggaagcctctgagggagattg 1
>53115_ptc-miRf11293-akr:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 81 ggaagcctctgagggagattgggagcttctccaaccat 118
|||||||| |||||||||| || |||||||||||||||
Sbjct: 38 ggaagcctttgagggagatcggaagcttctccaaccat 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2 tggggagtaagctctcaatctcccc 26
|||||||||||||||| ||||||||
Sbjct: 103 tggggagtaagctctccatctcccc 79
>52049_ptc-miRf10227-akr:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 81 ggaagcctctgagggagattgggagcttctccaaccat 118
|||||||| |||||||||| || |||||||||||||||
Sbjct: 38 ggaagcctttgagggagatcggaagcttctccaaccat 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2 tggggagtaagctctcaatctcccc 26
|||||||||||||||| ||||||||
Sbjct: 103 tggggagtaagctctccatctcccc 79
>52048_ptc-miRf10226-akr:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 81 ggaagcctctgagggagattgggagcttctccaaccat 118
|||||||| |||||||||| || |||||||||||||||
Sbjct: 38 ggaagcctttgagggagatcggaagcttctccaaccat 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2 tggggagtaagctctcaatctcccc 26
|||||||||||||||| ||||||||
Sbjct: 103 tggggagtaagctctccatctcccc 79
>53963_ptc-miRf12141-akr:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 80 tggaagcctctgagggagattgggagcttctccaaccat 118
||||| ||| |||||||| ||||||||||||||||||||
Sbjct: 38 tggaaacctttgagggag-ttgggagcttctccaaccat 1
Score = 46.1 bits (23), Expect = 6e-06
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 2 tggggagtaagctctcaatctccc-ccaaaggcatccaacattctcgttatttgaagcaa 60
|||||||||||||||||| | ||| | ||||| |||||||||| | ||| |||||||||
Sbjct: 109 tggggagtaagctctcaaacccccacaaaaggtttccaacattcccattacttgaagcaa 50
Query: 61 tta 63
|||
Sbjct: 49 tta 47
>54893_vvi-miR477:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 78 attggaagcctctgagggagattg 101
||||||||||| ||||||||||||
Sbjct: 32 attggaagcctttgagggagattg 9
