miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53038_ptc-miRf11216-akr:pmrd
Length = 118
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 64
Query: 61 tataaactgagatattggaagcctctgagggagattgggagcttctcc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tataaactgagatattggaagcctctgagggagattgggagcttctcc 112
>52413_ptc-miRf10591-akr:pmrd
Length = 108
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 1 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 60
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 108 ggagtaagctctcaatctcacccaaaggcatccaacattctcattatttgaagcaattac 49
Query: 61 tataaactgagatattggaagcctctgagggagattgggagcttctcc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 tataaactgagatattggaagcctctgagggagattgggagcttctcc 1
>52412_ptc-miRf10590-akr:pmrd
Length = 118
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 1 ggagtaagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattac 60
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 114 ggagtaagctctcaatctcacccaaaggcatccaacattctcattatttgaagcaattac 55
Query: 61 tataaactgagatattggaagcctctgagggagattgggagcttctcc 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tataaactgagatattggaagcctctgagggagattgggagcttctcc 7
>53040_ptc-miRf11218-akr:pmrd
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 6 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 60
Query: 66 actgagatattggaagcctctgagggagattgggagctt 104
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgagatattggaagcctctgagggagattgggagctt 99
>51777_ptc-miR477a:pmrd
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 13 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 26
Query: 73 tattggaagcctctgagggagattg 97
|||||||||||||||||||||||||
Sbjct: 25 tattggaagcctctgagggagattg 1
>51778_ptc-miR477b:pmrd
Length = 85
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 13 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 72
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 85 caatctcacccaaaggcatccaacattctcattatttgaagcaattactataaactgaga 26
Query: 73 tattggaagcctctgagggagattg 97
|||||||||||||||||||||||||
Sbjct: 25 tattggaagcctctgagggagattg 1
>54893_vvi-miR477:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 74 attggaagcctctgagggagattg 97
||||||||||| ||||||||||||
Sbjct: 32 attggaagcctttgagggagattg 9
>53963_ptc-miRf12141-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 51/60 (85%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 1 ggagtaagctctcaatctcccccaaa-ggcatccaacattctcgttatttgaagcaatta 59
||||||||||||||| | ||| |||| || |||||||||| | ||| ||||||||||||
Sbjct: 106 ggagtaagctctcaaacccccacaaaaggtttccaacattcccattacttgaagcaatta 47