miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53039_ptc-miRf11217-akr:pmrd
Length = 108
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 65
Query: 61 actgagatattggaagcctctgagggagattgggagctt 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 actgagatattggaagcctctgagggagattgggagctt 104
>53038_ptc-miRf11216-akr:pmrd
Length = 118
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 69
Query: 61 actgagatattggaagcctctgagggagattgggagctt 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 70 actgagatattggaagcctctgagggagattgggagctt 108
>52413_ptc-miRf10591-akr:pmrd
Length = 108
Score = 180 bits (91), Expect = 1e-46
Identities = 97/99 (97%)
Strand = Plus / Minus
Query: 1 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 60
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 103 aagctctcaatctcacccaaaggcatccaacattctcattatttgaagcaattactataa 44
Query: 61 actgagatattggaagcctctgagggagattgggagctt 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 43 actgagatattggaagcctctgagggagattgggagctt 5
>52412_ptc-miRf10590-akr:pmrd
Length = 118
Score = 180 bits (91), Expect = 1e-46
Identities = 97/99 (97%)
Strand = Plus / Minus
Query: 1 aagctctcaatctcccccaaaggcatccaacattctcgttatttgaagcaattactataa 60
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 109 aagctctcaatctcacccaaaggcatccaacattctcattatttgaagcaattactataa 50
Query: 61 actgagatattggaagcctctgagggagattgggagctt 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 49 actgagatattggaagcctctgagggagattgggagctt 11
>51777_ptc-miR477a:pmrd
Length = 85
Score = 168 bits (85), Expect = 5e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 8 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 26
Query: 68 tattggaagcctctgagggagattg 92
|||||||||||||||||||||||||
Sbjct: 25 tattggaagcctctgagggagattg 1
>51778_ptc-miR477b:pmrd
Length = 85
Score = 153 bits (77), Expect = 3e-38
Identities = 83/85 (97%)
Strand = Plus / Minus
Query: 8 caatctcccccaaaggcatccaacattctcgttatttgaagcaattactataaactgaga 67
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 85 caatctcacccaaaggcatccaacattctcattatttgaagcaattactataaactgaga 26
Query: 68 tattggaagcctctgagggagattg 92
|||||||||||||||||||||||||
Sbjct: 25 tattggaagcctctgagggagattg 1
>54893_vvi-miR477:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 69 attggaagcctctgagggagattg 92
||||||||||| ||||||||||||
Sbjct: 32 attggaagcctttgagggagattg 9
