miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53688_ptc-miRf11866-akr:pmrd
Length = 149
Score = 264 bits (133), Expect = 2e-71
Identities = 145/149 (97%)
Strand = Plus / Plus
Query: 1 attgaatttaccgacggaaaatatccgtcgttacatcggtcggtgaaattgaaaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 attgaatttaccgacggaaaatatccgtcgttacatcggtcggtgaaattgaaaataccg 60
Query: 61 acgaaatatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgac 120
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 atggaatatgtccgtctgtaaattcgtcggtactggtggaagctactgttaaatggcgac 120
Query: 121 ggattaagtccgtcggtaagtctgtcggt 149
|||||||||||||||||||||||||||||
Sbjct: 121 ggattaagtccgtcggtaagtctgtcggt 149
>53409_ptc-miRf11587-akr:pmrd
Length = 149
Score = 264 bits (133), Expect = 2e-71
Identities = 145/149 (97%)
Strand = Plus / Plus
Query: 1 attgaatttaccgacggaaaatatccgtcgttacatcggtcggtgaaattgaaaatactg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 attgaatttaccgacggaaaatatccgtcgttacatcggtcggtgaaattgaaaataccg 60
Query: 61 acgaaatatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgac 120
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 atggaatatgtccgtctgtaaattcgtcggtactggtggaagctactgttaaatggcgac 120
Query: 121 ggattaagtccgtcggtaagtctgtcggt 149
|||||||||||||||||||||||||||||
Sbjct: 121 ggattaagtccgtcggtaagtctgtcggt 149
>54329_ptc-miRf12507-akr:pmrd
Length = 152
Score = 170 bits (86), Expect = 2e-43
Identities = 135/150 (90%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 1 attgaatttaccgacggaaaatatccgtcgttacatcggtcggtgaaattga-aaatact 59
|||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct: 2 attgaaattaccgacggaaaatatccgtcgttaaatcggtcggtgaatgtatgaaatact 61
Query: 60 gacgaaatatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcga 119
|||| ||||| || |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 62 gacggaatatttcggtctgtaaatgcgtcggtactggtggaagctactgttaaatggcga 121
Query: 120 cggattaagtccgtcggtaagtctgtcggt 149
||||||| ||||||||||| |||||||||
Sbjct: 122 tggattaattccgtcggtaattctgtcggt 151
>53578_ptc-miRf11756-akr:pmrd
Length = 152
Score = 170 bits (86), Expect = 2e-43
Identities = 135/150 (90%), Gaps = 1/150 (0%)
Strand = Plus / Plus
Query: 1 attgaatttaccgacggaaaatatccgtcgttacatcggtcggtgaaattga-aaatact 59
|||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct: 2 attgaaattaccgacggaaaatatccgtcgttaaatcggtcggtgaatgtatgaaatact 61
Query: 60 gacgaaatatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcga 119
|||| ||||| || |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 62 gacggaatatttcggtctgtaaatgcgtcggtactggtggaagctactgttaaatggcga 121
Query: 120 cggattaagtccgtcggtaagtctgtcggt 149
||||||| ||||||||||| |||||||||
Sbjct: 122 tggattaattccgtcggtaattctgtcggt 151
>52326_ptc-miRf10504-akr:pmrd
Length = 133
Score = 168 bits (85), Expect = 7e-43
Identities = 122/133 (91%), Gaps = 1/133 (0%)
Strand = Plus / Plus
Query: 8 ttaccgacggaaaatatccgtcgttacatcggtcggtgaaattga-aaatactgacgaaa 66
|||||||||||| ||||||||||||||||||||||||||| | |||||| |||| ||
Sbjct: 1 ttaccgacggaacatatccgtcgttacatcggtcggtgaatgtatgaaataccgacggaa 60
Query: 67 tatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgacggatta 126
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatctccgtctgtaaattcgtcggtactggtggaagctactgttaaatggcgacggatta 120
Query: 127 agtccgtcggtaa 139
| |||||||||||
Sbjct: 121 attccgtcggtaa 133
>52710_ptc-miRf10888-akr:pmrd
Length = 149
Score = 157 bits (79), Expect = 3e-39
Identities = 125/139 (89%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 8 ttaccgacggaaaatatccgtcgttacatcggtcggtgaaattgaaa-atactgacgaaa 66
|||||||||||||||||||||||||| | | ||||||||| || | ||||||||||||
Sbjct: 9 ttaccgacggaaaatatccgtcgttaaagcagtcggtgaatttatgacatactgacgaaa 68
Query: 67 tatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgacggatta 126
||| ||| | ||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 69 tatttccatttgtaaattcgtcggtactggtggaagctactattaaatggcgacggatta 128
Query: 127 agtccgtcggtaagtctgt 145
||||||||||||| |||||
Sbjct: 129 agtccgtcggtaattctgt 147
>52258_ptc-miRf10436-akr:pmrd
Length = 152
Score = 155 bits (78), Expect = 1e-38
Identities = 127/142 (89%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 8 ttaccgacggaaaatatccgtcgttacatcggtcggtgaaattga-aaatactgacgaaa 66
|||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
Sbjct: 11 ttaccgacggaaaatatccgtcgttacatcggtcggtgaatgtatgaaataccgacggat 70
Query: 67 tatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgacggatta 126
|| |||||||||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 71 taattccgtctgtacattcgtcggtactggtggaagctactgttaaatagcgacggatta 130
Query: 127 agtccgtcggtaagtctgtcgg 148
| ||||||||||| ||||||||
Sbjct: 131 attccgtcggtaattctgtcgg 152
>54079_ptc-miRf12257-akr:pmrd
Length = 101
Score = 149 bits (75), Expect = 7e-37
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 53 aaatactgacgaaatatgtccgtctgtaaattcatcggtactggtggaagctactgttaa 112
|||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 7 aaataccgacggaatatgtccgtctgtaaattcgtcggtacttgtggaagctactgttaa 66
Query: 113 atggcgacggattaagtccgtcggtaagtctgtcg 147
||||||||||||||| |||||||||||||||||||
Sbjct: 67 atggcgacggattaattccgtcggtaagtctgtcg 101
>53913_ptc-miRf12091-akr:pmrd
Length = 149
Score = 149 bits (75), Expect = 7e-37
Identities = 124/139 (89%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 8 ttaccgacggaaaatatccgtcgttacatcggtcggtgaaattgaaa-atactgacgaaa 66
|||||||||||||||||||||||||| | | ||||||||| || | |||| |||| ||
Sbjct: 9 ttaccgacggaaaatatccgtcgttaaagcagtcggtgaatttatgacataccgacggaa 68
Query: 67 tatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgacggatta 126
||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tatttccgtctataaattcgtcggtactggtggaagctactgttaaatggcgacggatta 128
Query: 127 agtccgtcggtaagtctgt 145
||||| ||||||| |||||
Sbjct: 129 agtccttcggtaattctgt 147
>53485_ptc-miRf11663-akr:pmrd
Length = 72
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 1 attgaatttaccgacggaaaatatccgtcgtta 33
|||||| ||||||||||||||||||||||||||
Sbjct: 37 attgaaattaccgacggaaaatatccgtcgtta 5
>53439_ptc-miRf11617-akr:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 65 aatatgtccgtctgtaaattcatcggtactggtggaagctactgttaaatggcgacggat 124
||||| ||||||||||||||| | ||| ||||| ||||||||| ||||| ||||||||
Sbjct: 82 aatatatccgtctgtaaattcgttggtggcggtggcagctactgtcaaatgccgacggat 23
>53636_ptc-miRf11814-akr:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 65 aatatgtccgtctgtaaattcatc 88
||||| ||||||||||||||||||
Sbjct: 82 aatatatccgtctgtaaattcatc 59
>52641_ptc-miRf10819-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117 cgacggattaagtccgtcgg 136
||||||||||||||||||||
Sbjct: 74 cgacggattaagtccgtcgg 93
