miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53049_ptc-miRf11227-akr:pmrd
Length = 147
Score = 258 bits (130), Expect = 9e-70
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtccaaccccaacatgaggttgagcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtccagacccaacgtggggttgggcatggacgcgtccaaccccaacatgaggttgagcct 69
Query: 61 gcacgcccccaaacataaattgagtttgggtgtggacgcgttcagacccaatttcaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gcacgcccccaaacataaattgagtttgggtgtggacgcgttcagacccaatttcaggtt 129
Query: 121 gggcgtggac 130
||||||||||
Sbjct: 130 gggcgtggac 139
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 61.9 bits (31), Expect = 1e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtccaaccccaacatgaggttg 55
||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 27 gtccagacccaacgtggggttgggcgcggacgcgtccaggtccaacatgtggttg 81
>54053_ptc-miRf12231-akr:pmrd
Length = 73
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtcca 38
||||||||||| |||||||||||||||||| |||||||
Sbjct: 21 gtccagacccaccgtggggttgggcatggatgcgtcca 58
>53433_ptc-miRf11611-akr:pmrd
Length = 105
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 2 tccagacccaacgtggggttgggcatggacgcgt 35
|||||||||||||||||||||||| |||||||||
Sbjct: 13 tccagacccaacgtggggttgggcgtggacgcgt 46
>54299_ptc-miRf12477-akr:pmrd
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 8 cccaacgtggggttgggcatggacgcgtcc 37
|||||||||| |||||||||||||||||||
Sbjct: 96 cccaacgtggagttgggcatggacgcgtcc 67
>53832_ptc-miRf12010-akr:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
||||||||| ||||||||||||||||||||
Sbjct: 46 gtccagacctaacgtggggttgggcatgga 17
>53604_ptc-miRf11782-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gttgggcatggacgcgtccaaccccaacatgagg 52
|||||||||||||||||| ||||||||| |||||
Sbjct: 3 gttgggcatggacgcgtctaaccccaacttgagg 36
>52885_ptc-miRf11063-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 19 gttgggcatggacgcgtccaaccccaacatgagg 52
|||||||||||||||||| ||||||||| |||||
Sbjct: 3 gttgggcatggacgcgtctaaccccaacttgagg 36
>52218_ptc-miRf10396-akr:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 cccaacgtggggttgggcatggacgcgtcc 37
|||||||||| |||||||||||||||||||
Sbjct: 14 cccaacgtggagttgggcatggacgcgtcc 43
>51965_ptc-miRf10143-akr:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
||||||||| ||||||||||||||||||||
Sbjct: 51 gtccagacctaacgtggggttgggcatgga 80
>51964_ptc-miRf10142-akr:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
||||||||| ||||||||||||||||||||
Sbjct: 51 gtccagacctaacgtggggttgggcatgga 80
>53666_ptc-miRf11844-akr:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 4e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtccaaccccaa 45
||||||||||||| ||| | |||| |||||||||||||||||||
Sbjct: 3 gtccagacccaacttggaggtgggtgtggacgcgtccaaccccaa 47
>52985_ptc-miRf11163-akr:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||||||||||||||||||| ||||||
Sbjct: 28 gttgggcatggacgcgtccaaacccaac 1
>52984_ptc-miRf11162-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||||||||||||||||||| ||||||
Sbjct: 40 gttgggcatggacgcgtccaaacccaac 13
>52371_ptc-miRf10549-akr:pmrd
Length = 113
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||||||||||||||||||| ||||||
Sbjct: 75 gttgggcatggacgcgtccaaacccaac 102
>52370_ptc-miRf10548-akr:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||||||||||||||||||| ||||||
Sbjct: 67 gttgggcatggacgcgtccaaacccaac 94
>52310_ptc-miRf10488-akr:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 10 caacgtggggttgggcatggacgcgtccaaccccaacatg 49
|||| |||||||||||| ||||||||||| |||||||||
Sbjct: 109 caacatggggttgggcagggacgcgtccagacccaacatg 70
>52771_ptc-miRf10949-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtccaa 39
||||||| ||||| ||||||||||| | |||||||||||
Sbjct: 53 gtccagatccaacatggggttgggcgttgacgcgtccaa 91
>51898_ptc-miRf10076-akr:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtccaa 39
|||||||||||||||| ||||||| ||||||| |||||
Sbjct: 116 gtccagacccaacgtgaggttgggtgtggacgcatccaa 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 8 cccaacgtggggttgggcatggacgcgtccaaccccaacatg 49
||||||||||| |||||| |||||| |||||| ||||||||
Sbjct: 44 cccaacgtgggattgggcgtggacgtgtccaagtccaacatg 3
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 49 gtccagacccaacgtgaggttgggcgtgga 78
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 49 gtccagacccaacgtgaggttgggcgtgga 78
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 49 gtccagacccaacgtgaggttgggcgtgga 78
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 49 gtccagacccaacgtgaggttgggcgtgga 78
>53421_ptc-miRf11599-akr:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 5 agacccaacgtggggttgggcatggacgcgtccaaccccaac 46
||||||||| |||| ||||| ||||| ||||||||||||||
Sbjct: 78 agacccaacttgggagtgggcgtggacacgtccaaccccaac 37
>53057_ptc-miRf11235-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cccaacgtggggttgggcatggacgc 33
|||||||||||||||||| |||||||
Sbjct: 25 cccaacgtggggttgggcgtggacgc 50
>53056_ptc-miRf11234-akr:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cccaacgtggggttgggcatggacgc 33
|||||||||||||||||| |||||||
Sbjct: 25 cccaacgtggggttgggcgtggacgc 50
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 5 agacccaacgtggggttgggcatggacgcgtcca 38
||||||||| ||||||||||| |||||| |||||
Sbjct: 119 agacccaacatggggttgggcgtggacgtgtcca 152
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 agacccaacgtggggttgggcatggacgcgtc 36
||||| || |||||||||||| ||||||||||
Sbjct: 53 agacctaatgtggggttgggcgtggacgcgtc 84
>52198_ptc-miRf10376-akr:pmrd
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 ccaacgtggggttgggcatggacgcgtcca 38
||||||||||||||||| |||||||||||
Sbjct: 82 ccaacgtggggttgggcgcggacgcgtcca 111
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 34 gtccagacccaacgtgaggttgggcgtgga 5
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 34 gtccagacccaacgtgaggttgggcgtgga 5
>52017_ptc-miRf10195-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 34 gtccagacccaacgtgaggttgggcgtgga 5
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatgga 30
|||||||||||||||| |||||||| ||||
Sbjct: 34 gtccagacccaacgtgaggttgggcgtgga 5
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 gtggggttgggcatggacgcgtcca 38
|||||||||||| ||||||||||||
Sbjct: 7 gtggggttgggcgtggacgcgtcca 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 agacccaacgtggggttgggcatggacgcgtc 36
||||| || |||||||||||| ||||||||||
Sbjct: 64 agacctaatgtggggttgggcgtggacgcgtc 95
>53285_ptc-miRf11463-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||| |||||||||||||| |||||||
Sbjct: 29 gttggacatggacgcgtccagccccaac 2
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1 gtccagacccaacgtggggttgggcatggacgcgtc 36
||||||||||||| |||| |||||| |||||||||
Sbjct: 36 gtccagacccaacatgggattgggcggggacgcgtc 1
>52794_ptc-miRf10972-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||| |||||||||||||| |||||||
Sbjct: 29 gttggacatggacgcgtccagccccaac 2
>52525_ptc-miRf10703-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||| |||||||||||||| |||||||
Sbjct: 71 gttggacatggacgcgtccagccccaac 98
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 agacccaacgtggggttgggcatggacgcgtc 36
||||| || |||||||||||| ||||||||||
Sbjct: 53 agacctaatgtggggttgggcgtggacgcgtc 84
>52302_ptc-miRf10480-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 19 gttgggcatggacgcgtccaaccccaac 46
||||| |||||||||||||| |||||||
Sbjct: 71 gttggacatggacgcgtccagccccaac 98
>52213_ptc-miRf10391-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 tggggttgggcatggacgcgtcca 38
||||||||||||||||| ||||||
Sbjct: 52 tggggttgggcatggacacgtcca 75
