miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 51 gtcctgcgttaggacccaaggttcttgggt 80
|||| |||||||||||||||||||||||||
Sbjct: 100 gtccagcgttaggacccaaggttcttgggt 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7 ggatccaattctcttgggtcc 27
|||||||||||||||||||||
Sbjct: 83 ggatccaattctcttgggtcc 103
>53674_ptc-miRf11852-akr:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 aggacccaaggttcttgggtctta 84
||||||||||||||||||||||||
Sbjct: 87 aggacccaaggttcttgggtctta 110
>54037_ptc-miRf12215-akr:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 aggacccaaggttcttgggtctt 83
|||||||||||||||||||||||
Sbjct: 59 aggacccaaggttcttgggtctt 81
>52337_ptc-miRf10515-akr:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 ctgcgttaggacccaaggttcttgggtctta 84
|||||| | ||||||||||||||||||||||
Sbjct: 31 ctgcgtcatgacccaaggttcttgggtctta 1
>52942_ptc-miRf11120-akr:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 51 gtcctgcgttaggacccaaggttcttgggtctt 83
||||||| ||||||||||| ||||||||||||
Sbjct: 41 gtcctgccttaggacccaattttcttgggtctt 9
>53761_ptc-miRf11939-akr:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 64 acccaaggttcttgggtctt 83
||||||||||||||||||||
Sbjct: 27 acccaaggttcttgggtctt 8
>52618_ptc-miRf10796-akr:pmrd
Length = 122
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 51 gtcctgcgttaggacccaa 69
|||||||||||||||||||
Sbjct: 69 gtcctgcgttaggacccaa 51
>52456_ptc-miRf10634-akr:pmrd
Length = 115
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 ggatccaattctcttgggt 25
|||||||||||||||||||
Sbjct: 88 ggatccaattctcttgggt 106
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 51 gtcctgcgttaggacccaa 69
|||||||||||||||||||
Sbjct: 119 gtcctgcgttaggacccaa 101
