miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52756_ptc-miRf10934-akr:pmrd
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacattgtagctttcctcacaaaacattgtggattgctacagt 57
>54334_ptc-miRf12512-akr:pmrd
Length = 73
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcctcacaaaacattgtggattgctacagt 57
>54112_ptc-miRf12290-akr:pmrd
Length = 73
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcctcacaaaacattgtggattgctacagt 57
>52776_ptc-miRf10954-akr:pmrd
Length = 71
Score = 87.7 bits (44), Expect = 1e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 7 atcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 atcatgtggggaaaacattgtagctttccttacaaaacattgtggattgctacagt 56
>53536_ptc-miRf11714-akr:pmrd
Length = 88
Score = 83.8 bits (42), Expect = 2e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagtttt 65
||||||||||||||| |||||||||||||| || |||||| |||||||||||||||| ||
Sbjct: 9 aatcatgtggggaaagcattgtagctttcctcataaaacattgtggattgctacagtgtt 68
Query: 66 tc 67
||
Sbjct: 69 tc 70
>53807_ptc-miRf11985-akr:pmrd
Length = 73
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttccttacaaaacattgtggattgctacagt 57
>53126_ptc-miRf11304-akr:pmrd
Length = 73
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattgtggattgctacagt 57
>52744_ptc-miRf10922-akr:pmrd
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 10 atgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagtttttcc 68
||||||||||| || ||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct: 4 atgtggggaaagcactgtagctttcctcacaaaacattgtggattgctacagtgtttcc 62
>52007_ptc-miRf10185-akr:pmrd
Length = 156
Score = 75.8 bits (38), Expect = 4e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 gactaaatcatgtggggaaaacattgtagctttccaca 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gactaaatcatgtggggaaaacattgtagctttccaca 156
>53998_ptc-miRf12176-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 10 atgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||||||||| | || |||||| ||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagctttgctcataaaacattgtggattgctacagt 57
>53979_ptc-miRf12157-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||| ||||||||| | ||||||| | ||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttactcacaaaatattgtggattgctacagt 57
>53974_ptc-miRf12152-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgcta 58
|||||||||||||||||| ||||||||||| ||||||||| | ||||||||||
Sbjct: 1 aatcatgtggggaaaacactgtagctttcctcacaaaacattatggattgcta 53
>53908_ptc-miRf12086-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 10 atgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||||||||| | || |||||| ||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagctttgctcataaaacattgtggattgctacagt 57
>53776_ptc-miRf11954-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||||||||||||| | || |||| | ||||||||||||||||
Sbjct: 1 aatcatgtggggaaaacattgtagctttgctcataaaatattgtggattgctacagt 57
>53745_ptc-miRf11923-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||||||| || ||||||||||| ||||||||| | ||||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattatggattgctacagt 57
>52932_ptc-miRf11110-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||||||| || ||||||||||| ||||||||| ||| ||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattgtagattgctacagt 57
>52905_ptc-miRf11083-akr:pmrd
Length = 73
Score = 73.8 bits (37), Expect = 2e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 10 atgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
|||||||||||||||||||||||| | || |||||| ||||||||||||||||
Sbjct: 5 atgtggggaaaacattgtagctttgctcataaaacattgtggattgctacagt 57
>53148_ptc-miRf11326-akr:pmrd
Length = 88
Score = 71.9 bits (36), Expect = 7e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 10 atgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagtttttcct 69
|||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||
Sbjct: 12 atgtggggaaaacactgtagctttccttacaaattactgtggattgctacagtgtttccc 71
Query: 70 cata 73
||||
Sbjct: 72 cata 75
>54100_ptc-miRf12278-akr:pmrd
Length = 87
Score = 69.9 bits (35), Expect = 3e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctaca 60
||||||||||||||| |||||||||||| | || |||||| ||||||||||||||
Sbjct: 8 aatcatgtggggaaagcattgtagctttgctcataaaacattgtggattgctaca 62
>54326_ptc-miRf12504-akr:pmrd
Length = 73
Score = 65.9 bits (33), Expect = 4e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgcta 58
||||||||||||||| || ||||||||||| ||||||||| | ||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattatggattgcta 53
>53729_ptc-miRf11907-akr:pmrd
Length = 73
Score = 65.9 bits (33), Expect = 4e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgcta 58
||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctaacaaaacattgtggattgcta 53
>52685_ptc-miRf10863-akr:pmrd
Length = 73
Score = 65.9 bits (33), Expect = 4e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 10 atgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||| || ||||||||| | ||||||||| ||||||||||||||||
Sbjct: 5 atgtggggaaagcactgtagcttttctcacaaaacattgtggattgctacagt 57
>51853_ptc-miRf10031-akr:pmrd
Length = 73
Score = 65.9 bits (33), Expect = 4e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 6 aatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||||||| || ||||| ||||| ||||||||| ||||||| ||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagatttcctcacaaaacattgtggatagctacagt 57
>53549_ptc-miRf11727-akr:pmrd
Length = 82
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 ctaaatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagt 62
||||||||||||||||| || |||||||||| |||||||||| ||| |||||||||||
Sbjct: 3 ctaaatcatgtggggaag-cactgtagctttcatcacaaaacacggtgaattgctacagt 61
Query: 63 ttttcc 68
|||||
Sbjct: 62 gtttcc 67
>52748_ptc-miRf10926-akr:pmrd
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 5 aaatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagttt 64
|||| |||||||| || || ||||||||||| ||||||||| ||||||||| || ||| |
Sbjct: 1 aaattatgtggggtaagcactgtagctttcctcacaaaacattgtggattgttatagtgt 60
Query: 65 ttcc 68
||||
Sbjct: 61 ttcc 64
>53067_ptc-miRf11245-akr:pmrd
Length = 81
Score = 50.1 bits (25), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 taaatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagtt 63
|||||||||||| ||| || |||||||||| ||||||||||| || |||||||||||
Sbjct: 4 taaatcatgtggagaag-cactgtagctttcatcacaaaacactatgaattgctacagtg 62
Query: 64 tttcc 68
|||||
Sbjct: 63 tttcc 67
>53123_ptc-miRf11301-akr:pmrd
Length = 153
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 3 ctaaatcatgtggggaaaacattgtagctttcc 35
|||||||||||||||||| | |||||||||||
Sbjct: 118 ctaaatcatgtggggaaagtactgtagctttcc 150
>52041_ptc-miRf10219-akr:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 47 tgtggattgctacagtttttcctcatatg 75
|||||||||||| ||| ||||||||||||
Sbjct: 1 tgtggattgctatagtgtttcctcatatg 29
