miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53057_ptc-miRf11235-akr:pmrd
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 ggagttggatgcggtcgcgtccagcccaacgtggggttgggcgtggacgcagccatggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagttggatgcggtcgcgtccagcccaacgtggggttgggcgtggacgcagccatggcc 60
Query: 61 aacatgtggttgggcgcgttcgcatccaagccc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 aacatgtggttgggcgcgttcgcatccaagccc 93
>54019_ptc-miRf12197-akr:pmrd
Length = 83
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 2 gagttggatgcggtcgcgtccag-cccaacgtggggttgggcgtggacgcagccatggcc 60
|||||||| | ||| |||||||| ||||||||||||||||||| |||||| ||| | ||
Sbjct: 10 gagttggacgtggttgcgtccagacccaacgtggggttgggcgcggacgcgtccaggtcc 69
Query: 61 aacatgtggttggg 74
||||||||||||||
Sbjct: 70 aacatgtggttggg 83
>51898_ptc-miRf10076-akr:pmrd
Length = 139
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 16 cgcgtccagcccaacgtggggttgggcgtggacg 49
|||||||||||||||||||| |||||||||||||
Sbjct: 53 cgcgtccagcccaacgtgggattgggcgtggacg 20
Score = 60.0 bits (30), Expect = 3e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 12 cggtcgcgtccag-cccaacgtggggttgggcgtggacgcagccatggccaacatgtggt 70
||||||||||||| ||||||||| ||||||| ||||||||| ||| ||||||| || ||
Sbjct: 123 cggtcgcgtccagacccaacgtgaggttgggtgtggacgcatccaaggccaacctggagt 64
Query: 71 tgggcg 76
||||||
Sbjct: 63 tgggcg 58
>52771_ptc-miRf10949-akr:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 1 ggagttggatgcggtcgcgtccag-cccaacgtggggttgggcgtggacgc 50
|||||| ||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct: 35 ggagttagatgcggtcgcgtccagatccaacatggggttgggcgttgacgc 85
>53433_ptc-miRf11611-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 25 cccaacgtggggttgggcgtggacgc 50
||||||||||||||||||||||||||
Sbjct: 19 cccaacgtggggttgggcgtggacgc 44
>52213_ptc-miRf10391-akr:pmrd
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 11 gcggtcgcgtccagcccaacgtggggttgggcgtggacgc 50
|||| |||||| |||||||| ||||| |||||||||||||
Sbjct: 3 gcggacgcgtctagcccaacttgggggtgggcgtggacgc 42
>52019_ptc-miRf10197-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 25 cccaacgtggggttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||| ||| |||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 93 cccaacatggagttgggcgtggacgcatccaggtccaacatgcagttgggcg 42
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 37 cgcgtccagacccaacgtgaggttgggcgtgga 5
>52018_ptc-miRf10196-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 25 cccaacgtggggttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||| ||| |||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 93 cccaacatggagttgggcgtggacgcatccaggtccaacatgcagttgggcg 42
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 37 cgcgtccagacccaacgtgaggttgggcgtgga 5
>52017_ptc-miRf10195-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 25 cccaacgtggggttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||| ||| |||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 93 cccaacatggagttgggcgtggacgcatccaggtccaacatgcagttgggcg 42
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 37 cgcgtccagacccaacgtgaggttgggcgtgga 5
>52016_ptc-miRf10194-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 25 cccaacgtggggttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||| ||| |||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 93 cccaacatggagttgggcgtggacgcatccaggtccaacatgcagttgggcg 42
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 37 cgcgtccagacccaacgtgaggttgggcgtgga 5
>52859_ptc-miRf11037-akr:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1 ggagttggatgcggtcgcgtccag-cccaacgtggggttgggcgtggacgc 50
|||| |||| |||||||||||||| |||||| |||| ||||||| ||||||
Sbjct: 54 ggaggtggacgcggtcgcgtccagacccaacatgggattgggcggggacgc 4
>53050_ptc-miRf11228-akr:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 25 cccaacgtggggttgggcgtggacgc 50
|||||||||||||||||| |||||||
Sbjct: 8 cccaacgtggggttgggcatggacgc 33
>53049_ptc-miRf11227-akr:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 25 cccaacgtggggttgggcgtggacgc 50
|||||||||||||||||| |||||||
Sbjct: 17 cccaacgtggggttgggcatggacgc 42
>53932_ptc-miRf12110-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 36 gttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcg 41
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 46 cgcgtccagacccaacgtgaggttgggcgtgga 78
>53931_ptc-miRf12109-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 36 gttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcg 41
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 46 cgcgtccagacccaacgtgaggttgggcgtgga 78
>53930_ptc-miRf12108-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 36 gttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcg 41
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 46 cgcgtccagacccaacgtgaggttgggcgtgga 78
>53929_ptc-miRf12107-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 36 gttgggcgtggacgcagccatggccaacatgtggttgggcg 76
|||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 1 gttgggcgtggacgcatccaggtccaacatgcagttgggcg 41
Score = 42.1 bits (21), Expect = 7e-05
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 16 cgcgtccag-cccaacgtggggttgggcgtgga 47
||||||||| ||||||||| |||||||||||||
Sbjct: 46 cgcgtccagacccaacgtgaggttgggcgtgga 78
>52426_ptc-miRf10604-akr:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 25 cccaacgtggggttgggcgtggacg 49
|||||| ||||||||||||||||||
Sbjct: 122 cccaacatggggttgggcgtggacg 146
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gtggggttgggcgtggacgc 50
||||||||||||||||||||
Sbjct: 62 gtggggttgggcgtggacgc 81
>52198_ptc-miRf10376-akr:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 26 ccaacgtggggttgggcgtggacgc 50
|||||||||||||||||| ||||||
Sbjct: 82 ccaacgtggggttgggcgcggacgc 106
>54299_ptc-miRf12477-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 23 agcccaacgtggggttgggcgtggacgc 50
|||||||||||| ||||||| |||||||
Sbjct: 98 agcccaacgtggagttgggcatggacgc 71
>53604_ptc-miRf11782-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 cagcccaacgtggggttgggcgtggacg 49
||||||||| ||| ||||||||||||||
Sbjct: 54 cagcccaacttggagttgggcgtggacg 81
>52885_ptc-miRf11063-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 cagcccaacgtggggttgggcgtggacg 49
||||||||| ||| ||||||||||||||
Sbjct: 54 cagcccaacttggagttgggcgtggacg 81
>52428_ptc-miRf10606-akr:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gtggggttgggcgtggacgc 50
||||||||||||||||||||
Sbjct: 62 gtggggttgggcgtggacgc 81
>52427_ptc-miRf10605-akr:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gtggggttgggcgtggacgc 50
||||||||||||||||||||
Sbjct: 7 gtggggttgggcgtggacgc 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gtggggttgggcgtggacgc 50
||||||||||||||||||||
Sbjct: 73 gtggggttgggcgtggacgc 92
>52218_ptc-miRf10396-akr:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 23 agcccaacgtggggttgggcgtggacgc 50
|||||||||||| ||||||| |||||||
Sbjct: 12 agcccaacgtggagttgggcatggacgc 39
>52121_ptc-miRf10299-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 19 gtccagcccaacgtggggttgggcgtggacgc 50
||||| ||| |||||| |||||||||||||||
Sbjct: 40 gtccaaccccacgtggagttgggcgtggacgc 9
>51936_ptc-miRf10114-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 23 agcccaacgtggggttgggcgtggacgc 50
||||| || |||||||||||||||||||
Sbjct: 36 agccccacttggggttgggcgtggacgc 9
>51919_ptc-miRf10097-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 cagcccaacgtggggttgggcgtggacg 49
||||||||| ||| ||||||||||||||
Sbjct: 44 cagcccaacttggagttgggcgtggacg 71
