miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52026_ptc-miRf10204-akr:pmrd
Length = 105
Score = 63.9 bits (32), Expect = 1e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 34 acacaattcggcagcgaacacctgattcgctgcgga 69
|||||||||||||| |||||||||||||||||||||
Sbjct: 70 acacaattcggcagtgaacacctgattcgctgcgga 105
Score = 56.0 bits (28), Expect = 3e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 34 acacaattcggcagcgaacacctgattcgctgcgga 69
|||||||||||||||||| ||||||||||||||||
Sbjct: 32 acacaattcggcagcgaaaccctgattcgctgcgga 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 44 gcagcgaacacctgattcgctgcgga 69
||||||||||||||||||||||||||
Sbjct: 4 gcagcgaacacctgattcgctgcgga 29
>52311_ptc-miRf10489-akr:pmrd
Length = 110
Score = 60.0 bits (30), Expect = 2e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 38 aattcggcagcgaacacctgattcgctgcggaat 71
|||||||||||||||||||||||||||| |||||
Sbjct: 77 aattcggcagcgaacacctgattcgctgtggaat 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 39 attcggcagcgaacacctgattcgctgcgga 69
|||||||||||||||| ||||||||||||||
Sbjct: 1 attcggcagcgaacacttgattcgctgcgga 31
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 cagcgaacacttgattcgctg 28
|||||||||||||||||||||
Sbjct: 7 cagcgaacacttgattcgctg 27
>53076_ptc-miRf11254-akr:pmrd
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 12 gaacacttgattcgctga-aaatacacaattcggcagcgaacacctgattc 61
|||||| |||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 9 gaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcggcagcgaacacctgattcgctgcg 67
||||||| |||||||||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcg 27
>53075_ptc-miRf11253-akr:pmrd
Length = 67
Score = 54.0 bits (27), Expect = 1e-08
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 12 gaacacttgattcgctga-aaatacacaattcggcagcgaacacctgattc 61
|||||| |||||||||| |||||||||| ||| |||||||||||||||||
Sbjct: 9 gaacacctgattcgctgcgaaatacacaactcgacagcgaacacctgattc 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 tcggcagcgaacacctgattcgctgcg 67
||||||| |||||||||||||||||||
Sbjct: 1 tcggcagtgaacacctgattcgctgcg 27
>53938_ptc-miRf12116-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 38 aattcggcagcgaacacctgattcgctg 65
|||||| |||||||||||||||||||||
Sbjct: 38 aattcgacagcgaacacctgattcgctg 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 cgacagcgaacacttgattcgctg 28
||||||||||||| ||||||||||
Sbjct: 42 cgacagcgaacacctgattcgctg 65
>53083_ptc-miRf11261-akr:pmrd
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 38 aattcggcagcgaacacctgattcgctgcgga 69
||||| |||| |||||||||||||||||||||
Sbjct: 37 aattccgcagtgaacacctgattcgctgcgga 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 44 gcagcgaacacctgattcgctgcgga 69
|||| |||||||||||||||||||||
Sbjct: 4 gcagtgaacacctgattcgctgcgga 29
>53082_ptc-miRf11260-akr:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 38 aattcggcagcgaacacctgattcgctgcgga 69
||||| |||| |||||||||||||||||||||
Sbjct: 19 aattccgcagtgaacacctgattcgctgcgga 50
Score = 48.1 bits (24), Expect = 8e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 38 aattcggcagcgaacacctgattcgctgcgga 69
||||| |||| |||||||||||||||||||||
Sbjct: 58 aattccgcagtgaacacctgattcgctgcgga 89
>52234_ptc-miRf10412-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Minus
Query: 35 cacaattcggcagcgaacacctgattcgctgcgga 69
||||||||||||||||| | |||||||||||||||
Sbjct: 72 cacaattcggcagcgaa-aactgattcgctgcgga 39
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 38 aattcggcagcgaacacctgattcgctgc 66
|||| ||||| ||||||||||||||||||
Sbjct: 32 aatttggcagtgaacacctgattcgctgc 4
