miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53549_ptc-miRf11727-akr:pmrd
Length = 82
Score = 131 bits (66), Expect = 8e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 4 taaatcatgtggagaagcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4 taaatcatgtggggaagcactgtagctttcatcacaaaacacggtgaattgctacagtgt 63
Query: 64 ttccaacatgattttttc 81
||||||||||||||||||
Sbjct: 64 ttccaacatgattttttc 81
>53745_ptc-miRf11923-akr:pmrd
Length = 73
Score = 69.9 bits (35), Expect = 3e-13
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| ||| |||||||||||||| |||||||||| |||| |||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattatggattgctacagtgt 59
>52744_ptc-miRf10922-akr:pmrd
Length = 71
Score = 67.9 bits (34), Expect = 1e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 18 aagcactgtagctttcatcacaaaacactatgaattgctacagtgtttcc 67
|||||||||||||||| |||||||||| | || |||||||||||||||||
Sbjct: 13 aagcactgtagctttcctcacaaaacattgtggattgctacagtgtttcc 62
>52443_ptc-miRf10621-akr:pmrd
Length = 152
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 taaatcatgtggagaagcactgtagctttcatcaca 39
|||||||||||| |||||||||||||||||||||||
Sbjct: 117 taaatcatgtggggaagcactgtagctttcatcaca 152
>54326_ptc-miRf12504-akr:pmrd
Length = 73
Score = 61.9 bits (31), Expect = 6e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| ||| |||||||||||||| |||||||||| |||| ||||||| |||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattatggattgctatagtgt 59
>53126_ptc-miRf11304-akr:pmrd
Length = 73
Score = 61.9 bits (31), Expect = 6e-11
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| ||| |||||||||||||| |||||||||| | || |||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattgtggattgctacagtgt 59
>54334_ptc-miRf12512-akr:pmrd
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 21 cactgtagctttcatcacaaaacactatgaattgctacagtgt 63
||||||||||||| |||||||||| | || |||||||||||||
Sbjct: 17 cactgtagctttcctcacaaaacattgtggattgctacagtgt 59
>54112_ptc-miRf12290-akr:pmrd
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 21 cactgtagctttcatcacaaaacactatgaattgctacagtgt 63
||||||||||||| |||||||||| | || |||||||||||||
Sbjct: 17 cactgtagctttcctcacaaaacattgtggattgctacagtgt 59
>53974_ptc-miRf12152-akr:pmrd
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 21 cactgtagctttcatcacaaaacactatgaattgctacagtgt 63
||||||||||||| |||||||||| |||| ||||||| |||||
Sbjct: 17 cactgtagctttcctcacaaaacattatggattgctatagtgt 59
>52932_ptc-miRf11110-akr:pmrd
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| ||| |||||||||||||| |||||||||| | | |||||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctcacaaaacattgtagattgctacagtgt 59
>53536_ptc-miRf11714-akr:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 6e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgtt 64
|||||||||| ||| ||| |||||||||| ||| |||||| | || ||||||||||||||
Sbjct: 9 aatcatgtggggaaagcattgtagctttcctcataaaacattgtggattgctacagtgtt 68
Query: 65 tc 66
||
Sbjct: 69 tc 70
>52748_ptc-miRf10926-akr:pmrd
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 18 aagcactgtagctttcatcacaaaacactatgaattgctacagtgtttcc 67
|||||||||||||||| |||||||||| | || |||| || |||||||||
Sbjct: 15 aagcactgtagctttcctcacaaaacattgtggattgttatagtgtttcc 64
>52685_ptc-miRf10863-akr:pmrd
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 18 aagcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
||||||||||||||| |||||||||| | || |||||||||||||
Sbjct: 14 aagcactgtagcttttctcacaaaacattgtggattgctacagtgt 59
>53055_ptc-miRf11233-akr:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 taaatcatgtggagaag-cactgtagctttcatcacaaaacactatgaattgctacagtg 62
|||||||||||| ||| || |||||||||| ||||||||||| || |||||||||||
Sbjct: 4 taaatcatgtggggaaaacattgtagctttccacacaaaacactgtggattgctacagtt 63
Query: 63 tttcc 67
|||||
Sbjct: 64 tttcc 68
>52756_ptc-miRf10934-akr:pmrd
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 24 tgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| |||||||||| | || |||||||||||||
Sbjct: 20 tgtagctttcctcacaaaacattgtggattgctacagtgt 59
>53729_ptc-miRf11907-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| ||| |||||||||||||| | |||||||| | || ||||||| |||||
Sbjct: 1 aatcatgtggggaaagcactgtagctttcctaacaaaacattgtggattgctatagtgt 59
>53148_ptc-miRf11326-akr:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 21 cactgtagctttcatcacaaaacactatgaattgctacagtgtttcc 67
||||||||||||| | ||||| ||| || |||||||||||||||||
Sbjct: 24 cactgtagctttccttacaaattactgtggattgctacagtgtttcc 70
>51853_ptc-miRf10031-akr:pmrd
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 6 aatcatgtggagaa-gcactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| ||| ||||||||| |||| |||||||||| | || || ||||||||||
Sbjct: 1 aatcatgtggggaaagcactgtagatttcctcacaaaacattgtggatagctacagtgt 59
>53807_ptc-miRf11985-akr:pmrd
Length = 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 21 cactgtagctttcatcacaaaacactatgaattgctacagtg 62
||||||||||||| | |||||||| | || ||||||||||||
Sbjct: 17 cactgtagctttccttacaaaacattgtggattgctacagtg 58
>52041_ptc-miRf10219-akr:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 taaatcatgtggagaagcactgtagctttc 33
|||||||||||| ||||||||||| |||||
Sbjct: 122 taaatcatgtggggaagcactgtaactttc 151
>52776_ptc-miRf10954-akr:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 2e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 24 tgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||| | |||||||| | || |||||||||||||
Sbjct: 19 tgtagctttccttacaaaacattgtggattgctacagtgt 58
>53979_ptc-miRf12157-akr:pmrd
Length = 73
Score = 38.2 bits (19), Expect = 0.001
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 21 cactgtagctttcatcacaaaacactatgaattgctacagtgt 63
|||||||||||| |||||||| | | || |||||||||||||
Sbjct: 17 cactgtagctttactcacaaaatattgtggattgctacagtgt 59
