miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53537_ptc-miRf11715-akr:pmrd
Length = 66
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 cgcctgggtctcgcatgcttgccagacccaagcgacttgggtctgacagtcatgccagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcctgggtctcgcatgcttgccagacccaagcgacttgggtctgacagtcatgccagcc 60
Query: 61 caaacg 66
||||||
Sbjct: 61 caaacg 66
>52699_ptc-miRf10877-akr:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 24 agacccaagcgacttgggtctgacagtc 51
||||||||||||||||||||||||||||
Sbjct: 73 agacccaagcgacttgggtctgacagtc 100
>52914_ptc-miRf11092-akr:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 5e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 23 cagacccaagcgacttgggtctgacagtcatgccagcccaaa 64
|||||||||||| ||||||||||||| |||||| || |||||
Sbjct: 123 cagacccaagcgccttgggtctgacaatcatgcaagaccaaa 82
>53453_ptc-miRf11631-akr:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 20 tgccagacccaagcgacttgggtctgaca 48
||||||||||||||| ||||||| |||||
Sbjct: 127 tgccagacccaagcgtcttgggtttgaca 99
>52332_ptc-miRf10510-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 21 gccagacccaagcgacttgggtctg 45
|||||||||||| ||||||||||||
Sbjct: 98 gccagacccaagagacttgggtctg 74
>52181_ptc-miRf10359-akr:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 20 tgccagacccaagcgacttgggtctgaca 48
||||||||||||||| ||||||| |||||
Sbjct: 128 tgccagacccaagcgtcttgggtttgaca 100
>53484_ptc-miRf11662-akr:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 23 cagacccaagcgacttgggtctgacagtcatg 54
|||||||||| | |||| ||||||||||||||
Sbjct: 118 cagacccaagtgccttgagtctgacagtcatg 87
>53482_ptc-miRf11660-akr:pmrd
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 23 cagacccaagcgacttgggtctgacagtcatgccagccc 61
|||||||||| | ||||||| || || ||||||||||||
Sbjct: 39 cagacccaagagccttgggtttggcactcatgccagccc 1
>53228_ptc-miRf11406-akr:pmrd
Length = 75
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 23 cagacccaagcgacttgggtctg 45
||||||||||| |||||||||||
Sbjct: 64 cagacccaagctacttgggtctg 42
>53136_ptc-miRf11314-akr:pmrd
Length = 157
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 28 ccaagcgacttgggtctgacagtcatgccag 58
||||| ||||||||||||||| ||||||||
Sbjct: 1 ccaagtgacttgggtctgacacccatgccag 31
>52465_ptc-miRf10643-akr:pmrd
Length = 157
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 28 ccaagcgacttgggtctgacagtcatgccag 58
||||| ||||||||||||||| ||||||||
Sbjct: 157 ccaagtgacttgggtctgacacccatgccag 127
