miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52429_ptc-miRf10607-akr:pmrd
Length = 95
Score = 188 bits (95), Expect = 8e-49
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 29 ccctgacccaacaggagattgggcgtggacgcgtcttggcccaacgttgagtggggtgca 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ccctgacccaacaggagattgggcgtggacgcgtcttggcccaacgttgagtggggtgca 36
Query: 89 gacgcgttatggcccaacctagagctaggcgtggg 123
|||||||||||||||||||||||||||||||||||
Sbjct: 35 gacgcgttatggcccaacctagagctaggcgtggg 1
>52430_ptc-miRf10608-akr:pmrd
Length = 85
Score = 168 bits (85), Expect = 7e-43
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 34 acccaacaggagattgggcgtggacgcgtcttggcccaacgttgagtggggtgcagacgc 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 acccaacaggagattgggcgtggacgcgtcttggcccaacgttgagtggggtgcagacgc 26
Query: 94 gttatggcccaacctagagctaggc 118
|||||||||||||||||||||||||
Sbjct: 25 gttatggcccaacctagagctaggc 1
>54299_ptc-miRf12477-akr:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 7 gtggagttgggtgtggtcgcgtccctgacccaa 39
||||||||||| ||| ||||||||||||||||
Sbjct: 90 gtggagttgggcatggacgcgtccctgacccaa 58
>53668_ptc-miRf11846-akr:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 gattgggcgtggacgcgtcttggcccaac 73
||||||||||||||||||| ||||||||
Sbjct: 8 gattgggcgtggacgcgtccaggcccaac 36
>52218_ptc-miRf10396-akr:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 7 gtggagttgggtgtggtcgcgtccctgacccaa 39
||||||||||| ||| ||||||||||||||||
Sbjct: 20 gtggagttgggcatggacgcgtccctgacccaa 52
>53733_ptc-miRf11911-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 36 ccaacaggagattgggcgtggacgcgtc 63
|||||| ||| |||||||||||||||||
Sbjct: 1 ccaacacgaggttgggcgtggacgcgtc 28
>53732_ptc-miRf11910-akr:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 36 ccaacaggagattgggcgtggacgcgtc 63
|||||| ||| |||||||||||||||||
Sbjct: 1 ccaacacgaggttgggcgtggacgcgtc 28
