miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52087_ptc-miRf10265-akr:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 tgttcacgtgaacagtgcaagtgaagttacactgttcactcaaaacaatgaacaatgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttcacgtgaacagtgcaagtgaagttacactgttcactcaaaacaatgaacaatgcaa 60
Query: 61 tttactagcaatgttcacttaatgaacagtgcaattcacttgcattgttcacgtgaaca 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttactagcaatgttcacttaatgaacagtgcaattcacttgcattgttcacgtgaaca 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 83 tgaacagtgcaa-ttcacttgcattgttcacgtgaaca 119
||||||||| || |||||||||| ||||||||||||||
Sbjct: 38 tgaacagtgtaacttcacttgcactgttcacgtgaaca 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 1 tgttcacgtgaacagtgcaagtgaagttacactgttca 38
|||||||||||||| |||||||||| || |||||||||
Sbjct: 119 tgttcacgtgaacaatgcaagtgaa-ttgcactgttca 83
>54309_ptc-miRf12487-akr:pmrd
Length = 115
Score = 168 bits (85), Expect = 6e-43
Identities = 111/117 (94%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 2 gttcacgtgaacagtgcaagtgaagttacactgttcactcaaaacaatgaacaatgcaat 61
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 1 gttcacgtgaacagtgcaagtgaa-ttccactgttcacttaaaacaatgaacaatgcaat 59
Query: 62 ttactagcaatgttcacttaatgaacagtgcaattcacttgcattgttcacgtgaac 118
| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 60 t-actagcactgttcacttaatgaacagtgcaattcacttgcactgttcacgtgaac 115
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 83 tgaacagtgcaattcacttgcattgttcacgtgaac 118
||||||||| |||||||||||| |||||||||||||
Sbjct: 36 tgaacagtggaattcacttgcactgttcacgtgaac 1
Score = 50.1 bits (25), Expect = 4e-07
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 2 gttcacgtgaacagtgcaagtgaagttacactgttca 38
|||||||||||||||||||||||| || |||||||||
Sbjct: 115 gttcacgtgaacagtgcaagtgaa-ttgcactgttca 80
>52464_ptc-miRf10642-akr:pmrd
Length = 84
Score = 79.8 bits (40), Expect = 4e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 5 cacgtgaacagtgcaagtgaagttacactgttcactcaaaacaatgaacaatgcaattta 64
||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| |
Sbjct: 79 cacgtgaacagtgcaagtgaattga-actgttcactcaaaacaatgaacagtgcaattca 21
Query: 65 ctagcaatgttc 76
|| ||| |||||
Sbjct: 20 cttgcactgttc 9
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 81 aatgaacagtgcaattcacttgcattgttc 110
|||||||||||||||||||||||| |||||
Sbjct: 38 aatgaacagtgcaattcacttgcactgttc 9
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 tgaacagtgcaattcacttgcattgttcacgtg 115
|||||||| ||||||||||||| ||||||||||
Sbjct: 47 tgaacagttcaattcacttgcactgttcacgtg 79
>53967_ptc-miRf12145-akr:pmrd
Length = 122
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 72 tgttcacttaatgaacagtgcaattcacttgcattgttca 111
||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 83 tgttcacttaatgaacagtgcaattcatttgcactgttca 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 13 cagtgcaagtgaagttacactgttcactcaaaacaatgaacaatgcaat 61
||||||||| ||| || ||||||||||| ||||||||||||| ||||||
Sbjct: 5 cagtgcaagagaa-ttgcactgttcacttaaaacaatgaacagtgcaat 52
>53165_ptc-miRf11343-akr:pmrd
Length = 66
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 83 tgaacagtgcaattcacttgcattgttc 110
|||||||||||||||||||||| |||||
Sbjct: 35 tgaacagtgcaattcacttgcactgttc 62
>53488_ptc-miRf11666-akr:pmrd
Length = 68
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 84 gaacagtgcaattcacttgcattgttc 110
||||||||||||||||||||| |||||
Sbjct: 37 gaacagtgcaattcacttgcactgttc 63
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 83 tgaacagtgcaattcacttgcattgttcacgtg 115
|||| ||||||||||||||||| |||| |||||
Sbjct: 33 tgaatagtgcaattcacttgcactgtttacgtg 1
>54218_ptc-miRf12396-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 83 tgaacagtgcaattcacttgcattgttca 111
||||||||||||||| |||||| ||||||
Sbjct: 45 tgaacagtgcaattctcttgcaatgttca 73
>52975_ptc-miRf11153-akr:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 83 tgaacagtgcaattcacttgcattgttca 111
|||||||||||| ||||||||| ||||||
Sbjct: 80 tgaacagtgcaactcacttgcactgttca 108
