miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54136_ptc-miRf12314-akr:pmrd
Length = 151
Score = 299 bits (151), Expect = 3e-82
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatcagcatttctattggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatcagcatttctattggc 60
Query: 61 caaagatgaaaagggatgtgcaacgaatttgtgaacaatgcattgcttgcgaacctcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaagatgaaaagggatgtgcaacgaatttgtgaacaatgcattgcttgcgaacctcttg 120
Query: 121 aacacgtggtcaaggaacccacacgcaaaga 151
|||||||||||||||||||||||||||||||
Sbjct: 121 aacacgtggtcaaggaacccacacgcaaaga 151
>54233_ptc-miRf12411-akr:pmrd
Length = 169
Score = 75.8 bits (38), Expect = 8e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 56 tcttgattgtgggttgcgtgaccacgtgatcacaaggttcacatca 101
>53921_ptc-miRf12099-akr:pmrd
Length = 146
Score = 73.8 bits (37), Expect = 3e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 2 cttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 54 cttgattgtgggttgcgtgaccatgtgatcacaaggttcgcatca 98
>54193_ptc-miRf12371-akr:pmrd
Length = 184
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 8 tgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||||| |||||||||||||||||||||
Sbjct: 175 tgtgggttgcgtgaccatgtgatcacgaggttcgcatca 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 108 tgcgaacctcttgaacacgtggtcaaggaacccacacgcaaaga 151
|||||||||| ||| ||| |||||| | ||||||||||||||||
Sbjct: 140 tgcgaacctcgtgatcacatggtcacgcaacccacacgcaaaga 183
Score = 40.1 bits (20), Expect = 5e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 112 aacctcttgaacacgtggtcaaggaacccacacgcaaaga 151
|||||||||| || |||||||| ||||||||||| ||||
Sbjct: 41 aacctcttgatcatatggtcaagcaacccacacgctaaga 2
>54102_ptc-miRf12280-akr:pmrd
Length = 189
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
|||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct: 2 tcttgattttgggttgggtgaccacgtgatcatgaggttcgcatca 47
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 188 tcttgattgtgggttttgtgaccacatgatcacgaggttcgcatca 143
>54101_ptc-miRf12279-akr:pmrd
Length = 189
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
|||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct: 2 tcttgattttgggttgggtgaccacgtgatcatgaggttcgcatca 47
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 1 tcttgattgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 188 tcttgattgtgggttttgtgaccacatgatcacgaggttcgcatca 143
>53417_ptc-miRf11595-akr:pmrd
Length = 164
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 9 gtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
|||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gtgggttgcgtgaccatgtgatcacgaggttcgcatca 38
>52544_ptc-miRf10722-akr:pmrd
Length = 156
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 8 tgtgggttgcgtgaccacgtgatcacgaggttcgcatca 46
|||||||||||| |||||||||||||||| |||||||||
Sbjct: 28 tgtgggttgcgtaaccacgtgatcacgagattcgcatca 66
>53311_ptc-miRf11489-akr:pmrd
Length = 169
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 10 tgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||| ||||||||||||||| |||||||||||||
Sbjct: 169 tgggttgggtgaccacgtgatcatgaggttcgcatca 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gtgaccacgtgatcacgaggttcgcatca 46
|||||||| ||||||||||||||||||||
Sbjct: 9 gtgaccacatgatcacgaggttcgcatca 37
>53309_ptc-miRf11487-akr:pmrd
Length = 169
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 10 tgggttgcgtgaccacgtgatcacgaggttcgcatca 46
||||||| ||||||||||||||| |||||||||||||
Sbjct: 169 tgggttgggtgaccacgtgatcatgaggttcgcatca 133
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gtgaccacgtgatcacgaggttcgcatca 46
|||||||| ||||||||||||||||||||
Sbjct: 9 gtgaccacatgatcacgaggttcgcatca 37
>53463_ptc-miRf11641-akr:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 19 tgaccacgtgatcacgaggttcgcatcagca 49
|||||||||||||||||||| ||||||||||
Sbjct: 168 tgaccacgtgatcacgaggtccgcatcagca 138
>53347_ptc-miRf11525-akr:pmrd
Length = 186
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 18 gtgaccacgtgatcacgaggttcgcatcag 47
||||||| ||||||||||||||||||||||
Sbjct: 3 gtgaccaagtgatcacgaggttcgcatcag 32
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 16 gcgtgaccacgtgatcacgaggttcgcatcagc 48
||||||||| ||||||||||||||| |||||||
Sbjct: 186 gcgtgaccatgtgatcacgaggttcacatcagc 154
>53312_ptc-miRf11490-akr:pmrd
Length = 153
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gtgaccacgtgatcacgaggttcgcatca 46
|||||||| ||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatca 29
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 18 gtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
>53310_ptc-miRf11488-akr:pmrd
Length = 153
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 18 gtgaccacgtgatcacgaggttcgcatca 46
|||||||| ||||||||||||||||||||
Sbjct: 1 gtgaccacatgatcacgaggttcgcatca 29
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 18 gtgaccacgtgatcacgaggttcgcatca 46
||||||||||||||| |||||||||||||
Sbjct: 153 gtgaccacgtgatcatgaggttcgcatca 125
>52592_ptc-miRf10770-akr:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 tgaccacgtgatcacgaggttcgcatca 46
|||||| |||||||||||||||||||||
Sbjct: 1 tgaccatgtgatcacgaggttcgcatca 28
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 26 gtgatcacgaggttcgcatca 46
|||||||||||||||||||||
Sbjct: 164 gtgatcacgaggttcgcatca 144
>52545_ptc-miRf10723-akr:pmrd
Length = 150
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 gcgtgaccacgtgatcacgaggttcgc 42
||||||||||||||||| |||||||||
Sbjct: 1 gcgtgaccacgtgatcatgaggttcgc 27
