miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52531_ptc-miRf10709-akr:pmrd
Length = 120
Score = 83.8 bits (42), Expect = 3e-17
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 12 ggacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaaaatgagctggg 71
||||||||| |||||||| | ||| || |||||| ||||||||||||||| ||||||||
Sbjct: 13 ggacccaatgttgttgggttttgctaagtcagacccaaaacacttcaaaaaggagctggg 72
Query: 72 tctggctggacaacgggacctaatatccttggctctgg 109
|||||||| || ||||| | ||||||||||| |||||
Sbjct: 73 tctggctgagcagcgggatccaatatccttgggtctgg 110
>53792_ptc-miRf11970-akr:pmrd
Length = 119
Score = 69.9 bits (35), Expect = 4e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 10 caggacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaa 60
||||||||||||||||||||||| ||| ||||||||| |||| ||||||||
Sbjct: 12 caggacccaatagtgttgggtctcgcttagccagacccaaaatacttcaaa 62
>53791_ptc-miRf11969-akr:pmrd
Length = 106
Score = 69.9 bits (35), Expect = 4e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 10 caggacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaa 60
||||||||||||||||||||||| ||| ||||||||| |||| ||||||||
Sbjct: 4 caggacccaatagtgttgggtctcgcttagccagacccaaaatacttcaaa 54
>52165_ptc-miRf10343-akr:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 13 gacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaaaatgagctgggt 72
|||||||||||||||||| ||||| || ||||| ||||||||| ||||| | |||||
Sbjct: 82 gacccaatagtgttgggtttggctaagtgagacccaaaacactttaaaaaaaggttgggt 23
Query: 73 ctggctgg 80
||||||||
Sbjct: 22 ctggctgg 15
>52126_ptc-miRf10304-akr:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 13 gacccaatagtgttgggtctggctcagccagaccaaaaacacttcaaaaatgagctgggt 72
|||||||||||||||||| ||||| || ||||| ||||||||| ||||| | |||||
Sbjct: 82 gacccaatagtgttgggtttggctaagtgagacccaaaacactttaaaaaaaggttgggt 23
Query: 73 ctggctgg 80
||||||||
Sbjct: 22 ctggctgg 15
>54098_ptc-miRf12276-akr:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1 gctgcacaacaggacccaatagtgttgggtctggctcagcca 42
||||| || ||| |||||||||||||||||||| || |||||
Sbjct: 84 gctgcccagcagcacccaatagtgttgggtctgtctgagcca 125
>54097_ptc-miRf12275-akr:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1 gctgcacaacaggacccaatagtgttgggtctggctcagcca 42
||||| || ||| |||||||||||||||||||| || |||||
Sbjct: 84 gctgcccagcagcacccaatagtgttgggtctgtctgagcca 125
>53803_ptc-miRf11981-akr:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 caacaggacccaatagtgttgggtc 31
|||||||||||||||| ||||||||
Sbjct: 1 caacaggacccaatagcgttgggtc 25
