miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54042_ptc-miRf12220-akr:pmrd
Length = 123
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaatcatattttgagaccttatctaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttggtcatcaaggctctgataccatgtcaaagaatcatattttgagaccttatctaaca 62
Query: 61 gcttaagctattgggttgagatggttccttgacatgatatcagagccttgatgacgaag 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttaagctattgggttgagatggttccttgacatgatatcagagccttgatgacgaag 3
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 gtcatcaaggctctgataccatgtcaa 31
|||||||||||||||||| ||||||||
Sbjct: 7 gtcatcaaggctctgatatcatgtcaa 33
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 ttgacatgatatcagagccttgatgac 115
|||||||| ||||||||||||||||||
Sbjct: 91 ttgacatggtatcagagccttgatgac 117
>51802_ptc-miR481b:pmrd
Length = 220
Score = 105 bits (53), Expect = 7e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 56 taacagcttaagctattgggttgagatggttccttgacatgatatcagagccttgat 112
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 taacagcttaagctattgggttgagatggttctttgacatgatatcagagccttgat 73
Score = 60.0 bits (30), Expect = 4e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 34 aatcatattttgagaccttatctaacagcttaagctattgggttgagatggttccttgac 93
||||||||| || |||| | ||||||||||||||||||||||||| ||| ||| |||||
Sbjct: 158 aatcatattctggaacctcacctaacagcttaagctattgggttgaaatgattctttgac 217
Query: 94 at 95
||
Sbjct: 218 at 219
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaa 35
|||||| ||||||||||||||| ||||||||||||
Sbjct: 80 cttggttatcaaggctctgatatcatgtcaaagaa 46
>51805_ptc-miR481e:pmrd
Length = 196
Score = 97.6 bits (49), Expect = 2e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 55 ctaacagcttaagctattgggttgagatggttccttgacatgatatcagagccttgatga 114
||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct: 16 ctaacagcttaagctattgggttgagatgattctttgacatggtatcagagccttgatga 75
Query: 115 c 115
|
Sbjct: 76 c 76
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaatcat 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 80 cttggtcatcaaggctctgataccatgtcaaagaatcat 42
>51803_ptc-miR481c:pmrd
Length = 195
Score = 87.7 bits (44), Expect = 2e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 56 taacagcttaagctattgggttgagatggttccttgacatgatatcagagccttgatgac 115
|||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 17 taacagcttaagcttttgggttgagatgattctttgacatgatatcagagctttgatgac 76
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaatcat 39
|||||||||||| ||||||||| ||||||||||||||||
Sbjct: 80 cttggtcatcaaagctctgatatcatgtcaaagaatcat 42
>54258_ptc-miRf12436-akr:pmrd
Length = 165
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaatcata 40
|||||| |||||||||||||||||||||||||||| ||||
Sbjct: 1 cttggttatcaaggctctgataccatgtcaaagaaccata 40
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 69 tattgggttgagatggttccttgacatgatatcagagccttgatgac 115
|||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 115 tattaggttgagatggttctttaacatggtatcagagccttgatgac 161
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaa 35
|||||||||||||||||||||||||||| ||||||
Sbjct: 165 cttggtcatcaaggctctgataccatgttaaagaa 131
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 34 aatcatattttgagaccttatctaacagcttaagctattgg 74
|||||||| | ||||| ||| ||||||||||||||||||||
Sbjct: 94 aatcatatctagagactttacctaacagcttaagctattgg 54
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 81 atggttccttgacatgatatcagagccttgat 112
||||||| |||||||| |||||||||||||||
Sbjct: 39 atggttctttgacatggtatcagagccttgat 8
>53491_ptc-miRf11669-akr:pmrd
Length = 167
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaatcata 40
|||||| |||||||||||||||||||||||||||| ||||
Sbjct: 166 cttggttatcaaggctctgataccatgtcaaagaaccata 127
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 cttggtcatcaaggctctgataccatgtcaaagaa 35
|||||||||||||||||||||||||||| ||||||
Sbjct: 2 cttggtcatcaaggctctgataccatgttaaagaa 36
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 69 tattgggttgagatggttccttgacatgatatcagagccttgatgac 115
|||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 52 tattaggttgagatggttctttaacatggtatcagagccttgatgac 6
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 34 aatcatattttgagaccttatctaacagcttaagctattgg 74
|||||||| | ||||| ||| ||||||||||||||||||||
Sbjct: 73 aatcatatctagagactttacctaacagcttaagctattgg 113
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 81 atggttccttgacatgatatcagagccttgat 112
||||||| |||||||| |||||||||||||||
Sbjct: 128 atggttctttgacatggtatcagagccttgat 159
>52781_ptc-miRf10959-akr:pmrd
Length = 155
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 65 aagctattgggttgagatggttccttgacatgatatcagagccttgatgac 115
|||||||| |||||||||||||| |||||||| ||||||||| || |||||
Sbjct: 155 aagctattaggttgagatggttctttgacatggtatcagagctttaatgac 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 75 gttgagatggttccttgacatgatatcagagccttgat 112
||||||||||||| |||||||| ||||| |||||||||
Sbjct: 11 gttgagatggttctttgacatggtatcaaagccttgat 48
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 8 atcaaggctctgataccatgtcaaagaa 35
||||||||| ||||||||||||||||||
Sbjct: 48 atcaaggctttgataccatgtcaaagaa 21
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 5 gtcatcaaggctctgataccatgtcaaagaa 35
||||| || ||||||||||||||||||||||
Sbjct: 105 gtcattaaagctctgataccatgtcaaagaa 135
>53364_ptc-miRf11542-akr:pmrd
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 53 atctaacagcttaagctattgggttgagatggttccttgacatgata 99
|||||| | |||||| | ||||||||||||||||| |||||||||||
Sbjct: 30 atctaaaaacttaagttgttgggttgagatggttctttgacatgata 76
>51804_ptc-miR481d:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 6e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 34 aatcatattttgagaccttatctaacagcttaagctatt 72
||||||||| | |||||| | ||||||||||||||||||
Sbjct: 103 aatcatattctaagacctcacctaacagcttaagctatt 141
>53253_ptc-miRf11431-akr:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 34 aatcatattttgagaccttatctaacagcttaagctattgggttga 79
|||||||| ||| ||||| | |||||||||||| || |||||||||
Sbjct: 8 aatcatatcttgggacctcacctaacagcttaaacttttgggttga 53
>54219_ptc-miRf12397-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 4e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 76 ttgagatggttccttgacatgatatcagagccttgatgac 115
||||||||||| |||| ||||||| |||| |||||||||
Sbjct: 104 ttgagatggttatttgatatgatattagagtcttgatgac 143
