miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52105_ptc-miRf10283-akr:pmrd
          Length = 121

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 1   tatagagccaagtctcttgggtcttgggtctg 32
           ||||||||||||||||||||||||||||||||
Sbjct: 90  tatagagccaagtctcttgggtcttgggtctg 121

>53263_ptc-miRf11441-akr:pmrd
          Length = 124

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 5  gagccaagtctcttgggtcttggg 28
          ||||||||||||||||||||||||
Sbjct: 13 gagccaagtctcttgggtcttggg 36

>52662_ptc-miRf10840-akr:pmrd
          Length = 113

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 49 atcttgctttagtacccaatgctcttgggt 78
          ||||||| |||| |||||||||||||||||
Sbjct: 36 atcttgcattagcacccaatgctcttgggt 65

>52124_ptc-miRf10302-akr:pmrd
          Length = 113

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 49 atcttgctttagtacccaatgctcttgggt 78
          ||||||| |||| |||||||||||||||||
Sbjct: 36 atcttgcattagcacccaatgctcttgggt 65