miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54098_ptc-miRf12276-akr:pmrd
Length = 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 33 gcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagcagcaccca 91
|||||||||||||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct: 44 gcccaaaacacttctaaaaggagcaacaac-gttgggtcttgctgcccagcagcaccca 101
>54097_ptc-miRf12275-akr:pmrd
Length = 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 33 gcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagcagcaccca 91
|||||||||||||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct: 44 gcccaaaacacttctaaaaggagcaacaac-gttgggtcttgctgcccagcagcaccca 101
>53303_ptc-miRf11481-akr:pmrd
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 33 gcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagcagcaccca 91
|||||||||||||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct: 62 gcccaaaacacttctaaaaggagcaacaac-gttgggtcttgctgcccagcagcaccca 5
>53302_ptc-miRf11480-akr:pmrd
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 33 gcccaaaacacttccaaaaggagccagtagagttgggtcctgctgcccagcagcaccca 91
|||||||||||||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct: 62 gcccaaaacacttctaaaaggagcaacaac-gttgggtcttgctgcccagcagcaccca 5
>53015_ptc-miRf11193-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gcttggcagccagacccaacacg 31
|||||||||||||||||||||||
Sbjct: 10 gcttggcagccagacccaacacg 32
>52599_ptc-miRf10777-akr:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 35 ccaaaacacttccaaaaggag 55
|||||||||||||||||||||
Sbjct: 56 ccaaaacacttccaaaaggag 36
>54265_ptc-miRf12443-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cccaaaacacttccaaaagg 53
||||||||||||||||||||
Sbjct: 26 cccaaaacacttccaaaagg 45
>52773_ptc-miRf10951-akr:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cccaaaacacttccaaaagg 53
||||||||||||||||||||
Sbjct: 26 cccaaaacacttccaaaagg 45
