miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 92 ctcttgggtcttgcgtctggacccaa 117
||||||||||||||||| ||||||||
Sbjct: 46 ctcttgggtcttgcgtcaggacccaa 71
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 92 ctcttgggtcttgcgtctggacccaa 117
||||||||||||||||| ||||||||
Sbjct: 43 ctcttgggtcttgcgtcaggacccaa 18
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 92 ctcttgggtcttgcgtctggacccaa 117
||||||||||||||||| ||||||||
Sbjct: 43 ctcttgggtcttgcgtcaggacccaa 18
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 92 ctcttgggtcttgcgtctggacccaa 117
||||||||||||||||| ||||||||
Sbjct: 43 ctcttgggtcttgcgtcaggacccaa 18
>54238_ptc-miRf12416-akr:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 83 gacccagtcctcttgggtcttgcgtctggacccaatc 119
||||||| ||||| ||||||||||| ||||||||||
Sbjct: 58 gacccaggtctcttaggtcttgcgtcaggacccaatc 22
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 7 cttaggtcttgcgttaggacccaat 31
|||||||||||||| ||||||||||
Sbjct: 47 cttaggtcttgcgtcaggacccaat 23
>53297_ptc-miRf11475-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 93 tcttgggtcttgcgtctggacccaa 117
|||||||||||||||| ||||||||
Sbjct: 1 tcttgggtcttgcgtcaggacccaa 25
>52614_ptc-miRf10792-akr:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 83 gacccagtcctcttgggtcttgcgtctggacccaatc 119
||||||| ||||| ||||||||||| ||||||||||
Sbjct: 58 gacccaggtctcttaggtcttgcgtcaggacccaatc 22
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 7 cttaggtcttgcgttaggacccaat 31
|||||||||||||| ||||||||||
Sbjct: 47 cttaggtcttgcgtcaggacccaat 23
>52359_ptc-miRf10537-akr:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 95 ttgggtcttgcgtctggacccaatccttttaggtccc 131
||||||| ||| || ||||||||| ||||||||||||
Sbjct: 95 ttgggtcatgcatcaggacccaattcttttaggtccc 59
>52221_ptc-miRf10399-akr:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 agacccagtcctcttgggtcttgc 105
||||||||| ||||||||||||||
Sbjct: 17 agacccagttctcttgggtcttgc 40
>52075_ptc-miRf10253-akr:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 11 ggtcttgcgttaggacccaattctgatgggtc 42
|||| |||||||||||||||| || |||||||
Sbjct: 120 ggtcctgcgttaggacccaatgctaatgggtc 89
