miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54074_ptc-miRf12252-akr:pmrd
Length = 92
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 1 cggatttcggttcggttcggttaatatttcactaaactaacataactcggttcggttggt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cggatttcggttcggttcggttaatatttcaccaaactaacataactcggttcggttggt 60
Query: 61 tttttaagtctaaaccgaaccgaaccgaaccg 92
||||||||| ||||||||||||||||||||||
Sbjct: 61 tttttaagtttaaaccgaaccgaaccgaaccg 92
>52099_ptc-miRf10277-akr:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 45 actcggttcggttggttttttaagtctaaaccgaaccgaaccgaa 89
|||||||||||||||||||| || ||||||||||||||||||
Sbjct: 40 actcggttcggttggtttttatggttcaaaccgaaccgaaccgaa 84
>54261_ptc-miRf12439-akr:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 72 aaaccgaaccgaaccgaaccg 92
|||||||||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccg 13
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 aaaccgaaccgaaccgaaccg 92
|||||||||||||||||||||
Sbjct: 2 aaaccgaaccgaaccgaaccg 22
>54026_ptc-miRf12204-akr:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 72 aaaccgaaccgaaccgaaccg 92
|||||||||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccg 13
>53912_ptc-miRf12090-akr:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 72 aaaccgaaccgaaccgaaccg 92
|||||||||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccg 13
>53910_ptc-miRf12088-akr:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 72 aaaccgaaccgaaccgaaccg 92
|||||||||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccg 13
>54349_ptc-miRf12527-akr:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 aaccgaaccgaaccgaaccg 92
||||||||||||||||||||
Sbjct: 7 aaccgaaccgaaccgaaccg 26
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 aaccgaaccgaaccgaaccg 92
||||||||||||||||||||
Sbjct: 71 aaccgaaccgaaccgaaccg 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 73 aaccgaaccgaaccgaaccg 92
||||||||||||||||||||
Sbjct: 76 aaccgaaccgaaccgaaccg 57
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 72 aaaccgaaccgaaccgaacc 91
||||||||||||||||||||
Sbjct: 120 aaaccgaaccgaaccgaacc 101
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 6 ttcggttcggttcggttaat 25
||||||||||||||||||||
Sbjct: 23 ttcggttcggttcggttaat 4
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 aaccgaaccgaaccgaaccg 92
||||||||||||||||||||
Sbjct: 7 aaccgaaccgaaccgaaccg 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 aaccgaaccgaaccgaaccg 92
||||||||||||||||||||
Sbjct: 12 aaccgaaccgaaccgaaccg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 aaccgaaccgaaccgaaccg 92
||||||||||||||||||||
Sbjct: 17 aaccgaaccgaaccgaaccg 36
