miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52663_ptc-miRf10841-akr:pmrd
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 11 ccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttagg 64
||||||||| ||| |||||||||||||||||||||||| |||| || ||||||
Sbjct: 44 ccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgttagg 97
>52185_ptc-miRf10363-akr:pmrd
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 11 ccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttagg 64
||||||||| ||| |||||||||||||||||||||||| |||| || ||||||
Sbjct: 44 ccaattctcacgggtcctgtgtcaggacccaattctcttgggtccggcgttagg 97
>52123_ptc-miRf10301-akr:pmrd
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 11 ccaattctcttgggacctgtgtcaggacccaattctcttaggtc 54
||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 37 ccaattctcacgggtcctgtgtcaggacccaattctcttgggtc 80
>54192_ptc-miRf12370-akr:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 8 gacccaattctcttgggacctgtgtcaggacccaattctcttaggtc 54
|||||||| || ||||| || |||||||||||||| ||||||||||
Sbjct: 13 gacccaatgctgttgggtccggtgtcaggacccaacgctcttaggtc 59
>53296_ptc-miRf11474-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 8 gacccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttaggtcc 67
||||||||||||||||| | || ||| | |||||||||||| ||||| | || ||| ||
Sbjct: 9 gacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcaggacc 68
Query: 68 caacgctaatgggtc 82
||| | |||||||||
Sbjct: 69 caagggtaatgggtc 83
>52529_ptc-miRf10707-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 8 gacccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttaggtcc 67
||||||||||||||||| | || ||| | |||||||||||| ||||| | || ||| ||
Sbjct: 80 gacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcaggacc 21
Query: 68 caacgctaatgggtc 82
||| | |||||||||
Sbjct: 20 caagggtaatgggtc 6
>52241_ptc-miRf10419-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 8 gacccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttaggtcc 67
||||||||||||||||| | || ||| | |||||||||||| ||||| | || ||| ||
Sbjct: 80 gacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcaggacc 21
Query: 68 caacgctaatgggtc 82
||| | |||||||||
Sbjct: 20 caagggtaatgggtc 6
>52240_ptc-miRf10418-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 8 gacccaattctcttgggacctgtgtcaggacccaattctcttaggtctggtgttaggtcc 67
||||||||||||||||| | || ||| | |||||||||||| ||||| | || ||| ||
Sbjct: 80 gacccaattctcttgggtcttgcgtcgagtcccaattctcttgggtcttgcgtcaggacc 21
Query: 68 caacgctaatgggtc 82
||| | |||||||||
Sbjct: 20 caagggtaatgggtc 6
>52208_ptc-miRf10386-akr:pmrd
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 tgggacctgtgtcaggacccaattct 46
|||| |||||||||||||||||||||
Sbjct: 1 tgggtcctgtgtcaggacccaattct 26
>53125_ptc-miRf11303-akr:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 34 aggacccaattctcttaggtctggtgttaggtcccaa 70
|||||||||||||| |||||| |||||||| |||||
Sbjct: 83 aggacccaattctcataggtcctgtgttaggacccaa 47
>52476_ptc-miRf10654-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 4 tcaagacccaattctcttggg 24
|||||||||||||||||||||
Sbjct: 88 tcaagacccaattctcttggg 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 31 gtcaggacccaattctcttaggtctggt 58
|||| |||||||||||||| ||||||||
Sbjct: 89 gtcaagacccaattctcttgggtctggt 62
>52456_ptc-miRf10634-akr:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 4 tcaagacccaattctcttggg 24
|||||||||||||||||||||
Sbjct: 28 tcaagacccaattctcttggg 8
>53264_ptc-miRf11442-akr:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 19 cttgggacctgtgtcaggacccaattctcttaggtc 54
|||||| |||| ||||||| ||||||||||| ||||
Sbjct: 67 cttgggtcctgcgtcaggatccaattctcttgggtc 102
>51960_ptc-miRf10138-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 33 caggacccaattctcttaggtctg 56
||||||||||||||||| ||||||
Sbjct: 69 caggacccaattctcttgggtctg 92
