miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54261_ptc-miRf12439-akr:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaaccggttc 30
||||||||||||||||||||||||
Sbjct: 32 aaccgaaccgaaccgaaccggttc 9
>54026_ptc-miRf12204-akr:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaaccggttc 30
||||||||||||||||||||||||
Sbjct: 32 aaccgaaccgaaccgaaccggttc 9
>53910_ptc-miRf12088-akr:pmrd
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaaccggttc 30
||||||||||||||||||||||||
Sbjct: 32 aaccgaaccgaaccgaaccggttc 9
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccggttcggtttgaaccgg 42
||||||||||||||||| | | ||||||||||||||
Sbjct: 11 aaccgaaccgaaccgaaactggtcggtttgaaccgg 46
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 48.1 bits (24), Expect = 8e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccggttcggtttgaaccgg 42
||||||||||||||||| | | ||||||||||||||
Sbjct: 11 aaccgaaccgaaccgaaactggtcggtttgaaccgg 46
>53912_ptc-miRf12090-akr:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaaccggtt 29
|||||||||||||||||||||||
Sbjct: 32 aaccgaaccgaaccgaaccggtt 10
>52512_ptc-miRf10690-akr:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 3e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccggttcggtttgaaccg 41
||||||||||||||||| | | |||||||||||||
Sbjct: 22 aaccgaaccgaaccgaaaccgatcggtttgaaccg 56
>53966_ptc-miRf12144-akr:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 29 tcggtttgaaccggaattcggttcagttcggtt 61
|||||||||||||| |||||||| ||||||||
Sbjct: 34 tcggtttgaaccggttttcggttcggttcggtt 66
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 71 aaccgaaccgaaccgaaccg 52
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 76 aaccgaaccgaaccgaaccg 57
>53928_ptc-miRf12106-akr:pmrd
Length = 137
Score = 42.1 bits (21), Expect = 5e-05
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 12 aaccgaaccgaaccggttcggtttgaacc 40
|||||||||||||||| ||||||||||||
Sbjct: 28 aaccgaaccgaaccgg-tcggtttgaacc 1
>54339_ptc-miRf12517-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 73 aaccgaaccgaaccgaaccg 92
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 3 aaccgaaccgaaccgaaccg 22
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccggttcggtttgaaccgg 42
||||||||||||||||| | | ||||||||| ||||
Sbjct: 8 aaccgaaccgaaccgaaactggtcggtttgacccgg 43
>54074_ptc-miRf12252-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 73 aaccgaaccgaaccgaaccg 92
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 7 aaccgaaccgaaccgaaccg 26
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 12 aaccgaaccgaaccgaaccg 31
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccg 26
||||||||||||||||||||
Sbjct: 17 aaccgaaccgaaccgaaccg 36
Score = 40.1 bits (20), Expect = 2e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccggttcggtttgaaccgg 42
||||||||||||||||| | ||| ||||||||||||
Sbjct: 22 aaccgaaccgaaccgaaactgtt-ggtttgaaccgg 56
>52625_ptc-miRf10803-akr:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 7 aaccgaaccgaaccgaaccggttcggtttgaaccgg 42
|||||||||| |||||| | | ||||||||||||||
Sbjct: 52 aaccgaaccggaccgaaaccggtcggtttgaaccgg 87
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7 aaccgaaccgaaccgaacc 25
|||||||||||||||||||
Sbjct: 119 aaccgaaccgaaccgaacc 101
>52338_ptc-miRf10516-akr:pmrd
Length = 136
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 12 aaccgaaccgaaccggttcggtttgaaccgg 42
|||||||||||| | | ||||||||||||||
Sbjct: 93 aaccgaaccgaaaccggtcggtttgaaccgg 123
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 12 aaccgaaccgaaccggttcggtttgaaccgg 42
|||||||||||||| | |||||||||||||
Sbjct: 58 aaccgaaccgaacccggccggtttgaaccgg 88
