miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53915_ptc-miRf12093-akr:pmrd
Length = 91
Score = 101 bits (51), Expect = 9e-23
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 13 agcaacggataatccgttgctaactataagcaacggattttccgttgcaaaactagcaac 72
||||||||| ||||||||||| || || ||||||||||||| ||||||||||||||||||
Sbjct: 83 agcaacggaaaatccgttgctgacaattagcaacggatttttcgttgcaaaactagcaac 24
Query: 73 ggattctccgttgct 87
||||| |||||||||
Sbjct: 23 ggattatccgttgct 9
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 14 gcaacggataatccgttgctaactataagcaacggattttccgttgc 60
|||||| | ||||||||||||| | | ||||||||||||||||||||
Sbjct: 36 gcaacgaaaaatccgttgctaattgtcagcaacggattttccgttgc 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agcaacggataatccgttgcta 34
||||||||||||||||||||||
Sbjct: 9 agcaacggataatccgttgcta 30
>54121_ptc-miRf12299-akr:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 9 aattagcaacggataatccgttgct 33
|||||||||||||||||||| ||||
Sbjct: 57 aattagcaacggataatccgatgct 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 13 agcaacggataatccgttgctaactataagcaacggattttccgttgc 60
|||| ||||| |||||||||||| | | |||| |||| ||||||||||
Sbjct: 81 agcatcggattatccgttgctaattgttagcatcggaatttccgttgc 34
