miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52775_ptc-miRf10953-akr:pmrd
Length = 116
Score = 129 bits (65), Expect = 5e-31
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 1 gcgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcg 60
Query: 61 aatcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcgt 116
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 aatcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcgt 116
>52774_ptc-miRf10952-akr:pmrd
Length = 116
Score = 129 bits (65), Expect = 5e-31
Identities = 99/116 (85%)
Strand = Plus / Plus
Query: 1 gcgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcg 60
Query: 61 aatcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcgt 116
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 aatcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcgt 116
>52295_ptc-miRf10473-akr:pmrd
Length = 118
Score = 129 bits (65), Expect = 5e-31
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 1 gcgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 117 gcgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcg 58
Query: 61 aatcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcgt 116
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 57 aatcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcgt 2
>52294_ptc-miRf10472-akr:pmrd
Length = 118
Score = 129 bits (65), Expect = 5e-31
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 1 gcgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 117 gcgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcg 58
Query: 61 aatcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcgt 116
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 57 aatcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcgt 2
>53690_ptc-miRf11868-akr:pmrd
Length = 114
Score = 125 bits (63), Expect = 8e-30
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 2 cgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcga 61
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 114 cgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcga 55
Query: 62 atcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcg 115
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 54 atcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcg 1
>53689_ptc-miRf11867-akr:pmrd
Length = 114
Score = 125 bits (63), Expect = 8e-30
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 2 cgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcga 61
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 114 cgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcga 55
Query: 62 atcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcg 115
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 54 atcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcg 1
>53609_ptc-miRf11787-akr:pmrd
Length = 114
Score = 125 bits (63), Expect = 8e-30
Identities = 97/114 (85%)
Strand = Plus / Minus
Query: 2 cgcaagctgacccggacacccacgttaaactnnnnnnnnngaaatttagtaacaattcga 61
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 114 cgcaagctgacccggacacccacgttaaactaaaaaaaaagaaatttagtaacaattcga 55
Query: 62 atcaaatattataannnnnnnnaagattaacgtgggtgtccggaccagtttgcg 115
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 54 atcaaatattataattttttttaagattaacgtgggtgtccggaccagtttgcg 1
>54054_ptc-miRf12232-akr:pmrd
Length = 143
Score = 79.8 bits (40), Expect = 4e-16
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 42 gaaatttagtaacaattcgaatcaaatattataa-nnnnnnnnaagattaacgtgggtgt 100
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 85 gaaatttagtaacaattcgaatcaaatattataatttttttttaagattaacgtgggtgt 26
Query: 101 ccggaccagtttgcgt 116
||||||||| ||||||
Sbjct: 25 ccggaccagcttgcgt 10
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 cgcaagctgacccggacacccacgttaa 29
||||||||| |||||||||||||||||
Sbjct: 11 cgcaagctggtccggacacccacgttaa 38
>52104_ptc-miRf10282-akr:pmrd
Length = 163
Score = 79.8 bits (40), Expect = 4e-16
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 42 gaaatttagtaacaattcgaatcaaatattataa-nnnnnnnnaagattaacgtgggtgt 100
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 69 gaaatttagtaacaattcgaatcaaatattataatttttttttaagattaacgtgggtgt 128
Query: 101 ccggaccagtttgcgt 116
||||||||| ||||||
Sbjct: 129 ccggaccagcttgcgt 144
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 2 cgcaagctgacccggacacccacgttaa 29
||||||||| |||||||||||||||||
Sbjct: 143 cgcaagctggtccggacacccacgttaa 116
>52956_ptc-miRf11134-akr:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gcgcaagctgacccggacacccacgttaa 29
||||||| |||||||||||||||||||||
Sbjct: 1 gcgcaagttgacccggacacccacgttaa 29
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gcgcaagctgacccggacacccacgttaaact 32
|||||||||| || ||||||||||||||||||
Sbjct: 130 gcgcaagctggcctggacacccacgttaaact 99
>52955_ptc-miRf11133-akr:pmrd
Length = 149
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 gcgcaagctgacccggacacccacgttaa 29
||||||| |||||||||||||||||||||
Sbjct: 11 gcgcaagttgacccggacacccacgttaa 39
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1 gcgcaagctgacccggacacccacgttaaact 32
|||||||||| || ||||||||||||||||||
Sbjct: 140 gcgcaagctggcctggacacccacgttaaact 109
