miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54010_ptc-miRf12188-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
Query: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 31 caattagctgacatcttcaccagacctct 3
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 108 agaggtctggtaaagatgtcagctaattg 80
>54005_ptc-miRf12183-akr:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
Query: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 31 caattagctgacatcttcaccagacctct 3
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 108 agaggtctggtaaagatgtcagctaattg 80
>53613_ptc-miRf11791-akr:pmrd
Length = 120
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 56
Query: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 6
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 8 agaggtctggtaaagatgtcagctaattg 36
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 85 caattagctgacatcttcaccagacctct 113
>53185_ptc-miRf11363-akr:pmrd
Length = 120
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 56
Query: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 6
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 8 agaggtctggtaaagatgtcagctaattg 36
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 85 caattagctgacatcttcaccagacctct 113
>53176_ptc-miRf11354-akr:pmrd
Length = 120
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 56
Query: 61 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 gtttgtttcatcatcttctcaattagctgacatctttaccagacctcttg 6
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 8 agaggtctggtaaagatgtcagctaattg 36
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 85 caattagctgacatcttcaccagacctct 113
>53614_ptc-miRf11792-akr:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 3 agaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaagt 47
Query: 63 ttgtttcatcatcttctcaattagctgacatctttaccagacctct 108
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ttgtttcatcatcttctcaattagctgacatctttaccagacctct 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 1 agaggtctggtaaagatgtcagctaattg 29
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 78 caattagctgacatcttcaccagacctct 106
>53186_ptc-miRf11364-akr:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 3 agaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaagt 47
Query: 63 ttgtttcatcatcttctcaattagctgacatctttaccagacctct 108
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ttgtttcatcatcttctcaattagctgacatctttaccagacctct 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 1 agaggtctggtaaagatgtcagctaattg 29
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 78 caattagctgacatcttcaccagacctct 106
>53177_ptc-miRf11355-akr:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 3 agaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 agaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaagt 47
Query: 63 ttgtttcatcatcttctcaattagctgacatctttaccagacctct 108
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ttgtttcatcatcttctcaattagctgacatctttaccagacctct 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 1 agaggtctggtaaagatgtcagctaattg 29
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 78 caattagctgacatcttcaccagacctct 106
>54230_ptc-miRf12408-akr:pmrd
Length = 115
Score = 204 bits (103), Expect = 1e-53
Identities = 110/111 (99%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 54
Query: 61 gtttgtttcatc-atcttctcaattagctgacatctttaccagacctcttg 110
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gtttgtttcatcaatcttctcaattagctgacatctttaccagacctcttg 3
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 5 agaggtctggtaaagatgtcagctaattg 33
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 83 caattagctgacatcttcaccagacctct 111
>54229_ptc-miRf12407-akr:pmrd
Length = 111
Score = 204 bits (103), Expect = 1e-53
Identities = 110/111 (99%), Gaps = 1/111 (0%)
Strand = Plus / Minus
Query: 1 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cgagaggtctggtgaagatgtcagctaattgccaagtgggtattgagttatccctccaaa 52
Query: 61 gtttgtttcatc-atcttctcaattagctgacatctttaccagacctcttg 110
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gtttgtttcatcaatcttctcaattagctgacatctttaccagacctcttg 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 agaggtctggtgaagatgtcagctaattg 31
||||||||||| |||||||||||||||||
Sbjct: 3 agaggtctggtaaagatgtcagctaattg 31
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 caattagctgacatctttaccagacctct 108
||||||||||||||||| |||||||||||
Sbjct: 81 caattagctgacatcttcaccagacctct 109
