miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54374_pts-miR168a:pmrd
Length = 118
Score = 234 bits (118), Expect = 1e-62
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
Query: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
>51651_ptc-miR168b:pmrd
Length = 136
Score = 218 bits (110), Expect = 7e-58
Identities = 116/118 (98%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggctaaacacgat 60
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 70
Query: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 128
>51650_ptc-miR168a:pmrd
Length = 160
Score = 85.7 bits (43), Expect = 7e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51
|||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 61
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 125 gaattggatcccgccttgcatcaactga 152
>54375_pts-miR168b:pmrd
Length = 140
Score = 77.8 bits (39), Expect = 2e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattctgcgatttcattgccagatggct 51
|||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagctggct 51
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 113 gaattggatcccgccttgcatcaactga 140
>54388_rco-miR168:pmrd
Length = 156
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 85 gaaagagaattggatcccgccttgcatcaactga 118
||||| ||||||||||||||||||||||||||||
Sbjct: 104 gaaagtgaattggatcccgccttgcatcaactga 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>48560_gma-miR168:pmrd
Length = 125
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 79 gaattggatcccgccttgcatcaactga 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>48349_bna-miR168:pmrd
Length = 133
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt 44
>46958_ath-miR168b:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactga 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 13 tcgcttggtgcaggtcgggaac 34
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>46957_ath-miR168a:pmrd
Length = 138
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactga 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaac 39
>48649_hte-miR168:pmrd
Length = 140
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattct 29
|||||||||||||||||||||||| ||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgcttct 29
>54802_vvi-miR168:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 11 tcgcttggtgcaggtcgggaac 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 gatcccgccttgcatcaactga 118
||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactga 120
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 94 ttggatcccgccttgcatcaactga 118
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcggga 20
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
