miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54377_pvu-miR159:pmrd
Length = 174
Score = 345 bits (174), Expect = 7e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 61 gatcccacagttctacccatcagcatgttttgtggtagtcttgtggcttccatatctggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcccacagttctacccatcagcatgttttgtggtagtcttgtggcttccatatctggg 120
Query: 121 gagcttcatctgcctctatagtatcatccttctttggattgaagggagctctac 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagcttcatctgcctctatagtatcatccttctttggattgaagggagctctac 174
>48539_gma-miR159a:pmrd
Length = 214
Score = 252 bits (127), Expect = 8e-68
Identities = 165/177 (93%), Gaps = 3/177 (1%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 20 gtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatg 79
Query: 61 gatcccacagttctacccatcagcatg---ttttgtggtagtcttgtggcttccatatct 117
|||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
Sbjct: 80 gatcccacagttctacccatcaataagtgcttttgtggtagtcttgtggcttccatattt 139
Query: 118 ggggagcttcatctgcctctatagtatcatccttctttggattgaagggagctctac 174
|||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||
Sbjct: 140 ggggagcttcatttgcctttatagtattaaccttctttggattgaagggagctctac 196
>54777_vvi-miR159c:pmrd
Length = 190
Score = 91.7 bits (46), Expect = 2e-19
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| |||| ||||||||||| |||||||||||| | ||||
Sbjct: 8 gtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatg 67
Query: 61 gatcccacag 70
||||||||||
Sbjct: 68 gatcccacag 77
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 146 atccttctttggattgaagggagctctac 174
|||||| ||||||||||||||||||||||
Sbjct: 153 atccttgtttggattgaagggagctctac 181
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 5 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 64
Query: 61 gatcc 65
|||||
Sbjct: 65 gatcc 69
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 tttggattgaagggagctcta 173
|||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctcta 169
>51604_ptc-miR159c:pmrd
Length = 183
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Query: 61 gatcc 65
|||||
Sbjct: 70 gatcc 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 tttggattgaagggagctcta 173
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
>51602_ptc-miR159a:pmrd
Length = 183
Score = 81.8 bits (41), Expect = 2e-16
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Query: 61 gatcc 65
|||||
Sbjct: 70 gatcc 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 tttggattgaagggagctcta 173
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
>51603_ptc-miR159b:pmrd
Length = 187
Score = 67.9 bits (34), Expect = 2e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
|||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 10 gtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatg 69
Query: 61 gatcccacag 70
|||||||||
Sbjct: 70 aatcccacag 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 tttggattgaagggagctcta 173
|||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctcta 178
>48699_mtr-miR159a:pmrd
Length = 168
Score = 63.9 bits (32), Expect = 4e-11
Identities = 108/131 (82%), Gaps = 8/131 (6%)
Strand = Plus / Plus
Query: 45 gagctgcttagctatggatcccacagttctacccatcagcatgtt--ttgtggtagtctt 102
||||||||||||||||| |||| || |||||||||| |||| |||||||||| ||
Sbjct: 44 gagctgcttagctatgggtccctcaactctacccatct---tgttctttgtggtagtttt 100
Query: 103 gtggcttccatatctggggagcttcatctgcctctatagtatcatccttctttggattga 162
||||||||||||||| |||||| | || | || |||| | ||| |||||||||||||
Sbjct: 101 gtggcttccatatctagggagccttat---cacctttagtttaatctttctttggattga 157
Query: 163 agggagctcta 173
|||||||||||
Sbjct: 158 agggagctcta 168
>48395_bra-miR159a:pmrd
Length = 185
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 149 cttctttggattgaagggagctctac 174
||||||||||||||||||||||||||
Sbjct: 159 cttctttggattgaagggagctctac 184
>48339_bna-miR159:pmrd
Length = 183
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 149 cttctttggattgaagggagctctac 174
||||||||||||||||||||||||||
Sbjct: 157 cttctttggattgaagggagctctac 182
>46931_ath-miR159a:pmrd
Length = 184
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 149 cttctttggattgaagggagctctac 174
||||||||||||||||||||||||||
Sbjct: 159 cttctttggattgaagggagctctac 184
>46932_ath-miR159b:pmrd
Length = 196
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 149 cttctttggattgaagggagctct 172
||||||||||||||||||||||||
Sbjct: 164 cttctttggattgaagggagctct 187
>54930_zma-miR159a:pmrd
Length = 246
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>54631_sof-miR159d:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 156 tctttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tctttggattgaagggagctct 172
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
>48701_mtr-miR159c:pmrd
Length = 44
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tttggattgaagggagctctac 174
||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctac 22
>48686_ltu-miR159:pmrd
Length = 345
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 153 tttggattgaagggagctctac 174
||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctac 22
