miRNEST 2.0, an integrative microRNA resource :: BLAST
>48493_ghr-miR162a:pmrd
Length = 148
Score = 87.7 bits (44), Expect = 1e-18
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
|||||||||||||||||||||||||||||||| || |||||||||||| | | || |
Sbjct: 22 cactggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacaca 79
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
|| ||||||||||||||||||||||||||||||||
Sbjct: 80 aatacatgaatcgatcgataaacctctgcatccagc 115
>48423_cpa-miR162a:pmrd
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 85/96 (88%), Gaps = 5/96 (5%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
|||||||||||||||||||||||||||||||||| || |||| ||||||| || | |
Sbjct: 11 cactggaggcagcggttcatcgatctcttcctgg--gaatttggtgtgaaa-aatcacag 67
Query: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
|| ||||||||||||||||||||||||||||||||
Sbjct: 68 aa--catgaatcgatcgataaacctctgcatccagc 101
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 cactggaggcagcggttcatcgatctcttcctgg 34
||||||||||||||||||||||||||||||||||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctgg 64
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 cactggaggcagcggttcatcgatctcttcctgg 34
||||||||||||||||||||||||||||||||||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctgg 64
>51616_ptc-miR162a:pmrd
Length = 107
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctgg 34
||||||||||||||||||||||||||||||||||
Sbjct: 9 cactggaggcagcggttcatcgatctcttcctgg 42
>48545_gma-miR162a:pmrd
Length = 102
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccagc 96
||||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagc 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||||||||||
Sbjct: 8 cactggatgcagcggttcatcgatctcttcctg 40
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 51
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 53
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 53
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 51
>51618_ptc-miR162c:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 54
>51617_ptc-miR162b:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 8e-11
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgt 47
|||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcct-gaagatttttttgt 54
>48682_llu-miR162:pmrd
Length = 80
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccag 95
|||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctg 33
||||| ||||||||| |||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctg 31
>46937_ath-miR162a:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctg 33
|||||||||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 64 gcatgaatcgatcgataaacctctgcatccagc 96
|||||||| ||||||||||||||||||||||||
Sbjct: 78 gcatgaatagatcgataaacctctgcatccagc 110
>54784_vvi-miR162:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 cactggaggcagcggttcatcgatctcttcctg 33
||||||| |||||||||||||||||||||||||
Sbjct: 7 cactggatgcagcggttcatcgatctcttcctg 39
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 68 gaatcgatcgataaacctctgcatccagc 96
|||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagc 14
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 ctggaggcagcggttcatcgatc 25
|||||||||||||||||||||||
Sbjct: 102 ctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccagc 96
|||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagc 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatc 25
|||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48836_osa-miR162m:pmrd
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||| |||||||||||||
Sbjct: 80 aacgcaggaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 aacgcatgaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||| |||||||||||||
Sbjct: 90 aacgcaggaatcgatcgataagcctctgcatccag 124
>48707_mtr-miR162d:pmrd
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccag 95
||||||||| |||||||||||||||||||||
Sbjct: 57 catgaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatctcttcctg 33
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
>48706_mtr-miR162c:pmrd
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 65 catgaatcgatcgataaacctctgcatcca 94
||||||||| ||||||||||||||||||||
Sbjct: 30 catgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 3 ctggaggcagcggttcatcgatctcttcctg 33
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatcca 94
||||||||| ||||||||||||||||||||
Sbjct: 56 catgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tggaggcagcggttcatcgatctcttcctg 33
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 gaatcgatcgataaacctctgcatccag 95
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48690_mdo-miR162:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 65 catgaatcgatcgataaacctctgcatccag 95
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 3 ctggaggcagcggttcatcgatct 26
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
>48685_lsa-miR162:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 tcgataaacctctgcatccagc 96
||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagc 22
>48546_gma-miR162m:pmrd
Length = 367
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 tcgataaacctctgcatccagc 96
||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagc 22
