miRNEST 2.0, an integrative microRNA resource :: BLAST
>51762_ptc-miR408:pmrd
Length = 105
Score = 97.6 bits (49), Expect = 2e-21
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 16 agacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctg 75
||||||| ||||| |||||||||||| |||||||||| ||||||||||||| | ||
Sbjct: 3 agacagatgaagacggggaacaggcagagcatggatggagctactaacagaagtact-tg 61
Query: 76 ttttggctctacccctgcactgcctcttccctggctt 112
|||||||||||||| ||||||||||||||||||||||
Sbjct: 62 ttttggctctacccatgcactgcctcttccctggctt 98
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 83.8 bits (42), Expect = 3e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 31 gggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggctctacccc 90
|||||||||||| |||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 3 gggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctaccca 61
Query: 91 tgcactgcctcttccctg 108
||||||||||||||||||
Sbjct: 62 tgcactgcctcttccctg 79
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 44 tctgttttgtctctacccatgcactgcctcttccctggct 5
>47031_ath-miR408:pmrd
Length = 218
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 102 tctgttttgtctctacccatgcactgcctcttccctggct 141
>54892_vvi-miR408:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 73 ctgttttggctctacccctgcactgcctcttccctggct 111
||||||| ||||||||| |||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggct 98
>51347_ppe-miR408:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 7e-09
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 25 aagactgggaacaggcagtgcatggatggggctactaacagaaaac---atctgttttgg 81
||||| ||||||||| || |||||||||| | | | ||||||||| | ||||| |||
Sbjct: 7 aagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtgg 66
Query: 82 ctctacccctgcactgcctcttccctggct 111
|||||| | |||||||||||||||||||||
Sbjct: 67 ctctactcatgcactgcctcttccctggct 96
>48428_cpt-miR408:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
||||||||||||| ||| |||||||||||||||||||||
Sbjct: 52 tctgttttggctcctcccatgcactgcctcttccctggct 91
>54649_sof-miR408d:pmrd
Length = 215
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 86 acccctgcactgcctcttccctggct 111
||||||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggct 197
>55104_zma-miR408:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 149 cccctgcactgcctcttccctggct 173
>54648_sof-miR408c:pmrd
Length = 286
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 244 cccctgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 244 cccctgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 241 cccctgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 181 cccctgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 87 cccctgcactgcctcttccctggct 111
|||||||||||||||||||||||||
Sbjct: 150 cccctgcactgcctcttccctggct 174
>54690_tae-miR408:pmrd
Length = 187
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 ccctgcactgcctcttccctggct 111
||||||||||||||||||||||||
Sbjct: 134 ccctgcactgcctcttccctggct 157
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggcttcc 114
||||||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggcttcc 117
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggct 85
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 91 tgcactgcctcttccctggct 111
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
>54650_sof-miR408e:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 ccctgcactgcctcttccctggct 111
|||||||||| |||||||||||||
Sbjct: 242 ccctgcactgactcttccctggct 265
